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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAAACCTCATCTCCTGACCgtaagtcttcatttagtttgatcaaaatcgcatagcaataactcaggcatagcctatgtcgttatgtagcagtattcagacaaatcctttgtctgggacactaaaaagataatgtttgatgacacag

Basic information

species Arabidopsis thaliana
transcript AT4G36190.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G24270.1 (Glycine max), 5'ss of exon 11
CGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAAACCTCATCTCCTGACCgtaagtcttcatttagtttgat-caaaatcgcatagcaataactcaggcatagcctatgtcgttatgtagcagtattcagacaaatcctttgtctgggacactaaaaagataatgtttgatgacacag
   | || ||  | ||  ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||| |||   ||| || |||      || |   | |  || |     || |  ||    | | |  || ||| |||       || |  | || || ||  |||     |                   
GTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATCgtgagttaccatataatttttcatgaatttagacaataacattcttgggagggc--gagccctggtgcagcggta-------aagt--tgtgccttggtgacttgttggtc-----------------

upper sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G24290.1 (Glycine max), 5'ss of exon 10
CGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAAACCTCATCTCCTGACCgtaagtcttcatttagtttgatcaaaatcgcatagcaataactcaggcatagcctatgtcgt-tatgtagcagtattcagacaaatcctttgtctgggacactaaaaagataatgtttgatgacacag
   | || || || || |||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||||  || |||   |||||| |||  |  || |     |   | |  |||  |||   |  |||| | | ||| |  | ||  | |       ||| |||   |  | | |  |                   
GTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATAgtgagttgccatttacttttcttcaatttagtcaatgaca-ttcattcattatccttgtcatctctgtggtgg-atatata-------tttctctaaaatccaacatgg-------------------