Sequence
atgc intronic sequence ATGC exonic sequenceGTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGgtagtcatcagttccatgtttgtgattagtttttcactcagtttctgtttaaagaaaagaatcatatgtgaattttctatcgacatatatgacatag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G34640.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G34640.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA12G04220.2 (Glycine max), 5'ss of exon 10
GTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGgtagtcatcagttccatgtttgtgattagtttttcactcagtttctgtttaaagaa---aagaatca--tatgt-gaattttctatcgacatatatgacatag
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GTTTAACTGCCAAAGTGATTGACCGAACAAAGACTATGGCTGATGTCTACGGTGCTTTTTTTGATTTTGCTTCTATGTTGGAGCCCAAGgtatgaatctgttgt-tgtccttaacacggtatg-attaggttttcaactgaagaatgtgagtgctactcatgttgcattttacattgg-ataaagttcctaa
upper sequence: AT4G34640.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA11G11960.1 (Glycine max), 5'ss of exon 10
GTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGgtagtcatcagttccatgtttgtgattagtttttcactcagtttctgtttaaagaa-aagaat----catatgt-gaattttctatcgacatatatgacatag
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GTTTAACTGCCAAAGTGATTGACCGAACTACGACTATGGCTGATGTCTATGGTGCTTTCTTTGATTTTGCTTCTATGTTGGAGTCCAAGgtatgaatc--tttcgttgtcctgaacacattatgattaggttttcaacagaagaatgtgaatgctactcatgttgcattttacattggataatgttcctaa-
upper sequence: AT4G34640.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv03s0038g00450.t01 (Vitis vinifera), 5'ss of exon 10
GTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGgtagtcatcagttccatgtttgtgattagtttttcactcagtttctgtttaaagaaaagaatcatatgtgaattttctatcgacatatatgacatag--------
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GTCTTACTGCCAAAGTTATTGACAGAACAAAAGCGATGTCTGATGTCTATGGTGCTTTCTTCGATTTTTCTTGTATGCTGAAGTCCAAGgtacggcgccttttcatatgtaccatacgagatgcattag----ccagcaaggagaaagtgcttttcttcaacttaatagagtta-atataccatttgctcatcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86078637|gb|DR374394.1|DR374394EST: CTGATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAG GTTGACAAGAACGATCCAAATGCCAGTAAGACACTAAACCGACTTGAAGCC
genomic: CTGATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGgtagtcatca ... tatgacatagGTTGACAAGAACGATCCAAATGCCAGTAAGACACTAAACCGACTTGAAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTTACTGCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATGGTGCTTTCTATGATTTTTCCTGCATGCTGAAGACAAAGgtagtcatcagttccatgtttgtgattagtttttcactcagtttctgtttaaagaaaagaatcatatgtgaattttctatcgacatatatgacatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA