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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTGATCCATGCGAGGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGCAACTGGTCCAAGATCTGCATTATTTGTTCCAGATgtaggtttcttaacatgtttcagcatatatggaagttatcctggttgtcagggctttcaagcattcatatgtttccttgccttttccacttcccaggatatctaattagagtcccttgatctcgttcaattatgcatag

Basic information

species Arabidopsis thaliana
transcript AT4G33650.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 10
GAGGTTGATCCATGCGAGGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGCAACTGGTCCAAGATCTGCATTATTTGTTCCAGATgtaggtttcttaacatgtttcagcatatatggaagttatcctggttgtcagggctttcaagcattcatatgtttccttgccttttccacttcccaggatatctaattagagtcccttgatctcgttcaattatgcatag
||||| ||||||||||| || ||||| |||||||||||||| || || || |||||||||||||| || | ||| ||| | |||||||| || |||||| |  | ||   | | |  | | |     | |||  |  | ||||   |       ||||| |||  | ||     || |  | |     |   | || |  |       |  ||    ||||  |   | |||
GAGGTGGATCCATGCGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCAACTGGACCTAAATCAGCACTGTTTGTTCCTGAAgtaggtcttatcaccc-tcttattacacacacctgatattttcttagtcaaaccc-----acattcttatcctaccacatattgtaaattattt-gaccaactgaaaaatacttatctattattttca--tgcacttag

upper sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 10
GAGGTTGATCCATGCGAGGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGCAACTGGTCCAAGATCTGCATTATTTGTTCCAGATgtaggtttc-ttaacatgtttcagcatatatg-----gaagttatcctggttg--tcagggctttcaagcattcatatgtttccttgccttttccacttcccaggatatctaattagagtcccttgatctcgttcaattatgcatag
||||| |||||||| || || ||||| |||||||||||||| || || || |||||||| ||||| || | ||| ||| | ||||||||||| |||||| |  |   | | ||   ||| | |       ||  || || | ||||   |     | | |  |   || || | |   |   ||  |||  |   |  |||  ||  ||   |   || || |  ||             
GAGGTGGATCCATGTGAAGATTTGACTGATGATGATATTCGCACAGCCATACAGAATGCCACTGGACCTAAATCAGCACTGTTTGTTCCAGAAgtaggtctaatcgccctcttattgcacacacacccctgatattttcttagttgaaaccacattcttatcctaccaaatatgtaaattatttggccaactgaaaaaatacttatctattatt--ttcatgttattag-----------

upper sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 11
GAGGTTGATCCATGCGAGGACTTGACAGATGATGATATTCGGACTGCAATTCAGAATGCAACTGGTCCAAGATCTGCATTATTTGTTCCAGATgtaggtttcttaacatgttt-cagcatatatggaagttatcctggttg--tcagggctt---tcaagcattcatatgtttccttgccttttccacttcccaggatatctaattagagtccct-tgatctcgttcaattatgcatag-----------------
||||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||| || || ||||||||||||||||| ||||| ||| || |  ||      ||      | |    ||||| ||   ||    |  |   ||   || |   |||| ||  ||       | ||   | | | |   |   |  ||  | || || |  |  | |  |||||    ||                  
GAGGTGGATCCATGTGAGGATTTGACTGATGATGACATTCGAACTGCAATTCAGAATGCAACCGGCCCTAGATCTGCATTATTTGTGCCAGAAgtatgtcttatagggctcttgttttttcttcctaagttctctgagtaaattttgaatttatttctaaacttcaaattgttttgccattatttagcatgcgattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcag