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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGGGTTACTTCACTTACATGGCTGTTGATAGTCTCCCTGGGAATCAATTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAgtactgaaactctcttcttatacatcccaacctcttttaacatgtttataaactttctgatatgttttgctttgttttgtgtgtgtgaacag

Basic information

species Arabidopsis thaliana
transcript AT4G32510.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA06G07480.1 (Glycine max), 5'ss of exon 11
TATGGGGTTACTTCACTTACATGGCTGTTGATAGTCTCCCTGGGAATCAATTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAgtac-----------tgaaactctcttcttatacatcccaacctct--tttaacatgtttataa--actttctgatatg---ttttgctttg---ttttgtgtg-tgtgaacag-------------------------------------------
| ||||| || ||| ||||||||||  ||||||||||||| |||||||| |||||||||||  |   | | || ||| |||| ||  | || || | ||||||            || || |   ||   || ||||      |     || | |  || || |   | |||  || |    |||  ||  |   ||| || |  ||| |  ||                                           
TTTGGGGATATTTCGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCCCAAGCCGGCGTTACAAgtaagtatagccttatgtaaattagtttcaatgcatcatggttttgaagttgagacattgatcacggccttcaaatttacattttcactaggcattttagtatactgtaagaagctaattacgtattttttgtcatggttcttgtctgtttgggcag

upper sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 10
TATGGGGTTACTTCACTTACATGGCTGTTGATAGTCTCCCTGGGAATCAATTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAgtac-tgaaactctcttcttatacatcccaacctcttttaacat----gtttataaactttctgatatgttttgctttgt-tttgtgtgtgtga-acag---------------------------------------------------------------------------------------
||||||| || ||  ||||||||||  ||||||||||||| |||||||| |||||||||||  |   | | || ||| ||||  |  | || || | ||||||  |  | |  | |    ||   |  |||    |  |    |    ||  | | | | |        ||    |||   |||   | |  ||  |||                                                                                       
TATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTTCTCTTCGTCACCTCAAGCCGGCGTTACAAgtaagtacagccttatgtaaattagtttcaatgcataatggttttgaagtcgagagattattcacggctttcaaatttacattttcatctaggatgcagaattcaattaacattttcactaggcattttaatatactataagaagctaattacatattttgtcatggttcttgtctgtttgggcag

upper sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 10
TATGGGGTTACTTCACTTACATGGCTGTTGATAGTCTCCCTGGGAATCAATTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAgtac----tgaaactctcttcttatacatcccaacctcttttaacatgtttataaactt----tctgata-----------tgttttgctttgttttgtgtgtgtgaacag----------------------------
| ||||| |||||  | |||||||| |||||||| |||||||||||||| |||||||||||  |   | | || || ||||| ||||| || || | ||||||      | ||     |    ||  | |  |        |       | |||||        | || |           ||  |   ||| |||  | |   |  || |                            
TTTGGGGATACTTTGCCTACATGGCCGTTGATAGCCTCCCTGGGAATCAGTTCTGGGAAAGGATCTTGCTGCTCTTTATCACCCCTGGCCGCCGTTACAAgtaagtcacgcaataggatcgcgatttagctaatttcgccgtggggcagtgataaatacagaaccagaaaaaatgaatagatgactaattttatttattattgttatactgatcccatgtcatgcaatatttgttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059581|gb|DR355338.1|DR355338
EST:     TTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAN                         GGTTCTTGAAGGTTTACATGCATCATTTGTGGAGATAGTACCATACAAGTC
genomic: TTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAgtactgaaac ... gtgtgaacagGGTTCTTGAAGGTTTACATGCATCATTTGTGGAGATAGTACCATACAAGTC