Sequence
atgc intronic sequence ATGC exonic sequenceACAGAGACAGTAACACTTGTTAAAGCAACTCCGTTTGATTATGGAAGCGGTCATGTCAATCCAAGCGCTGCTCTAGACCCTGGTCTCATCTTTGATGCAGgtaaatactcttactccattgacataaacctcagttttcgtcactccctcttcaatctctggtcactaggatactcattggttttattcttgtatggccatacactttgtgattgattgaattttcttgaag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G30020.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G06740.1 (Glycine max), 5'ss of exon 9
ACAGAGACAGTAACACTTGTTAAAGCAACTCCGTTTGATTATGGAAGCGGTCATGTCAATCCAAGCGCTGCTCTAGACCCTGGTCTCATCTTTGATGCAGgtaaatactcttactccattgacataaacctcagttttcgtcactccctcttcaatctctggtcactaggatactcattggttttattcttgtatggccatacactttgtgattgattgaattttcttgaag
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TCAGAAGCTATGAGGCTGGTCAAAGCTACTCCTTTTGATTATGGGAGTGGTCATGTTGATCCAACTGCTGCATTGGACCCTGGGCTCATCTTTGATGCAGgtttggtttcttcttctacagcaatgagccatga-----acaaccatataaggaaacttaacaccacaccttattccaaaaccttaagactca--ggttatgggtct-------------------------
upper sequence: AT4G30020.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 9
ACAGAGACAGTAACACTTGTTAAAGCAACTCCGTTTGATTATGGAAGCGGTCATGTCAATCCAAGCGCTGCTCTAGACCCTGGTCTCATCTTTGATGCAGgtaaatactcttactc-cattgacataaac-ctcagttttcgtcactccctcttcaatctctggtcactaggatactcattggttttattcttgtatggccatacactttgtgattgattgaattttcttgaag
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ACAGAAGCTATGAAGCTGGTCAAAGCCACTCCTTTTGATTATGGGAGTGGACACGTTAATCCCAGAGCTGCCTTGGACCCTGGCCTCATCTTTGATGCAGgtttgtttacctcctctctctaatgtaactattttgtttgtcttggcacgtttgtgttctgagttgaccattaaatt--ttgaattttgttgtatctgagaa--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116427755|gb|EG470347.1|EG470347EST: TCATGTCAATCCAAGCGCTGCTCTAGACCCTGGTCTCATCTTTGATGCAG GTTATGAGGATTATATAGGGTTCTTGTGCACCACACCTGGTATCGATGCTC
genomic: TCATGTCAATCCAAGCGCTGCTCTAGACCCTGGTCTCATCTTTGATGCAGgtaaatactc ... tttcttgaagGTTATGAGGATTATATAGGGTTCTTGTGCACCACACCTGGTATCGATGCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAGAGACAGTAACACTTGTTAAAGCAACTCCGTTTGATTATGGAAGCGGTCATGTCAATCCAAGCGCTGCTCTAGACCCTGGTCTCATCTTTGATGCAGgtaaatactcttactccattgacataaacctcagttttcgtcactccctcttcaatctctggtcactaggatactcattggttttattcttgtatggccatacactttgtgattgattgaattttcttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT