1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATATCCACATCAAGATATGAACATTGGTCAGCTTTAGCTCCTCTTCCCTCTGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAGgtttgatcttcaactatcctgccaatatttcccacataatcatttagtttgagtatataaaactaattggtaaaatcacatctcgcag
species | Arabidopsis thaliana |
transcript | AT4G25070.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAG GTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGAEST: gi|116426415|gb|EG469007.1|EG469007
genomic: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAGgtttgatctt ... catctcgcagGTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGA
EST: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAG GTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGAEST: gi|116426413|gb|EG469005.1|EG469005
genomic: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAGgtttgatctt ... catctcgcagGTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGA
EST: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCGGACAG GTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGAEST: gi|116426408|gb|EG469000.1|EG469000
genomic: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAGgtttgatctt ... catctcgcagGTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGA
EST: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAG GTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGAEST: gi|116426418|gb|EG469010.1|EG469010
genomic: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAGgtttgatctt ... catctcgcagGTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGA
EST: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAG GTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGA
genomic: TGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAGgtttgatctt ... catctcgcagGTGGTAGCGATCGCACTTGGAGCAAAGTCATCAGTAATTTCAGTGATTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCCACATCAAGATATGAACATTGGTCAGCTTTAGCTCCTCTTCCCTCTGAAGTTGTCCTTTCCGCTGCCCAAAAGTCTGAAGATTCCTGGCAGACAGgtttgatcttcaactatcctgccaatatttcccacataatcatttagtttgagtatataaaactaattggtaaaatcacatctcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA