1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCACTCAGAGAAATATGTGAGAAGAGGTCGTTTGGATTGGCCAGATGGGGCAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAGgttggtcaagtgttgatattttgagtttgggtggagtgttatggtagtttgtaaaataatggtgatgcctgtattgcag
species | Arabidopsis thaliana |
transcript | AT4G24740.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAG AATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAGEST: gi|86086900|gb|DR382659.1|DR382659
genomic: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAGgttggtcaag ... tgtattgcagAATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAG
EST: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAG AATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAGTTAATAAATATGEST: gi|164101169|gb|ES186812.1|ES186812
genomic: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAGgttggtcaag ... tgtattgcagAATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAGTTAATAAATATG
EST: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAG AATTTAATAATGCAACATGTAGGACCACTCAGCCGGGGAG
genomic: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAGgttggtcaag ... tgtattgcagAATTTAATAATGCAACATGT-GGACCACTCAGCCGGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACTCAGAGAAATATGTGAGAAGAGGTCGTTTGGATTGGCCAGATGGGGCAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAGgttggtcaagtgttgatattttgagtttgggtggagtgttatggtagtttgtaaaataatggtgatgcctgtattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC