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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGATGCTTTGTCTAAAATGGTTGATCCTTCTCTTAATGGCATGTATCCAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaataccatccaaactctggagaatgtcctaattgaacaaaaccgaaattgttttgtaaagtaaccatatctctctatctttctttgttaatttag

Basic information

species Arabidopsis thaliana
transcript AT4G22130.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22130.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G11820.1 (Glycine max), 5'ss of exon 15
TATAGATGCTTTGTCTAAAATGGTTGATCCTTCTCTTAATGGCATGTATCCAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaataccatccaaactctggagaatgtcctaattgaacaaaaccgaa----attgttttgtaaagtaaccatatctctctatctttctttgttaatttag-
||||||||| ||| | ||||||||||||||| || | || ||||||||||| || ||||||||||| || ||||| || |||||||| |||||| |||||||||||     |   ||   || |         |  ||   |  | |       | |   || |  | | ||   |       || | | | ||  | | ||  
TATAGATGCCTTGGCCAAAATGGTTGATCCTACTTTGAACGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaaactttgt---aatgatgaaatgaacaacagatggctagcaacttgtcttagtaccttttccatttactgcactcacgcatttatttctgc-actatact

upper sequence: AT4G22130.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA09G00970.1 (Glycine max), 5'ss of exon 15
TATAGATGCTTTGTCTAAAATGGTTGATCCTTCTCTTAATGGCATGTATCCAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaataccatccaaactctggagaatgtcctaattgaacaaaaccgaaattgttttgtaa---agtaaccatatctctctatctttctttgttaatttag
||||||||| ||| | ||||||||||||||| || | || ||||||||||| || ||||||||||| || ||||| || |||||||| |||||| ||||||||||    | || ||   |   |  |    | ||| |     |||     ||  |   ||    | | ||   |    |  || | | | ||  | | |||
TATAGATGCCTTGGCCAAAATGGTTGATCCTACTTTGAACGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGgtaaagcttc-tctaatgaccaaatgaacaacaaatggctagcaacttgttttagtacctattccatttactgcactcgtgcatttatttctgc-actatag

upper sequence: AT4G22130.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv10s0116g00100.t01 (Vitis vinifera), 5'ss of exon 15
TATAGATGCTTTGTCTAAAATGGTTGATCCTTCTCTTAATGGCATGTATCCAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaa-taccatccaaactctggagaatgtcctaattgaacaaaaccgaaattg-ttttgtaaagtaaccatatctctctatctttctttgttaatttag--
|||||||||  || | ||||||||||||||||| || |||||||||||||| || |||||  |||| |||||||| |||||||||||  | ||| ||||||||||| | | |  |    ||| |  | |    ||||| | |      ||   |  |||| | ||  ||   |     | |           | |||      
TATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGCATGTATCCTGCAAAGTCTTTGTCACGTTTTGCTGACATCATTGCCTTGTGTGTTCAGgtaaaacttctaagccgtttctagc-actaaaataatttagctt--ttgaggctacttttatgaaaaaatgtttgaaatttgggaaatggactgaatcccatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116380249|gb|EG422841.1|EG422841
EST:     CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAG                         CCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
genomic: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaatacc ... gttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
EST: gi|86077335|gb|DR373092.1|DR373092
EST:     CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAG                         CCGGAWCCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
genomic: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaatacc ... gttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
EST: gi|163999808|gb|ES004479.1|ES004479
EST:     GTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAG                         CCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
genomic: GTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaatacc ... gttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
EST: gi|116380253|gb|EG422845.1|EG422845
EST:     CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAG                         CCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
genomic: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaatacc ... gttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA