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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTGTATCAGCTTTTGACAAGGATTTAACACTTGATGTTCTTGATCATCCGGTTCTGAACTTAATCTACTATATGgtaagtaacactacatcttcattctttctctttcttattctcattcattaactcgaaaaaaaaaaaactacag

Basic information

species Arabidopsis thaliana
transcript AT4G21790.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078543|gb|DR374300.1|DR374300
EST:     TAACACTTGATGTTCTTGATCATCCGGTTCTGAACTTAATCTACTATATG                         GTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTA
genomic: TAACACTTGATGTTCTTGATCATCCGGTTCTGAACTTAATCTACTATATGgtaagtaaca ... aaaactacagGTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTA
EST: gi|124755766|gb|EH845896.1|EH845896
EST:     CTTAATCTACTATATG                         GTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTA
genomic: CTTAATCTACTATATGgtaagtaaca ... aaaactacagGTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTA
EST: gi|124885500|gb|EH964402.1|EH964402
EST:     CACTTGATGTTCTTGATCATCCGGTTCTGAACTTAATCTACTATATG                         GTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTA
genomic: CACTTGATGTTCTTGATCATCCGGTTCTGAACTTAATCTACTATATGgtaagtaaca ... aaaactacagGTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTA
EST: gi|124854837|gb|EH939274.1|EH939274
EST:     CTTGATCATCCGGTTCTGAACTTAATCTACTATATG                         GTGGTAGAAGTACTTCCATCGGCACT
genomic: CTTGATCATCCGGTTCTGAACTTAATCTACTATATGgtaagtaaca ... aaaactacagGTGGTAGAAGTACTTCCATCGGCACT
EST: gi|164186956|gb|ES024350.1|ES024350
EST:     TAACACTCGATGTTCTTGATCATCCGGTTCTGAACTTAATCTACTATATG                         GTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTA
genomic: TAACACTTGATGTTCTTGATCATCCGGTTCTGAACTTAATCTACTATATGgtaagtaaca ... aaaactacagGTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTA