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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGACTCCGTTATAAGCTAATCGTCCGAACAAGCCAAGATTGGGATACTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTgtaagtaaaatcacttttgtctttcattttcgatatacttttgtgggtagattaattatagttctgttactttaaatcatag

Basic information

species Arabidopsis thaliana
transcript AT4G18810.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064609|gb|DR360366.1|DR360366
EST:     CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCT                         GTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTAC
genomic: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTgtaagtaaaa ... taaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTAC
EST: gi|116378718|gb|EG421310.1|EG421310
EST:     CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCT                         GTACGCTTACCTTTCTCGTCTTTAAGACC
genomic: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTgtaagtaaaa ... taaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACC
EST: gi|124775655|gb|EH865784.1|EH865784
EST:     ACCAGGCCAATGGCAATCT                         GTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTT
genomic: ACCAGGCCAATGGCAATCTgtaagtaaaa ... taaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTT
EST: gi|125187777|gb|EL202731.1|EL202731
EST:     CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCT                         GTACGCTTACCTTTCTCGTCTTTAAGACCTGTA
genomic: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTgtaagtaaaa ... taaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTA