ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag

Basic information

species	Arabidopsis thaliana
transcript	AT4G16155.1
intron #	10
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggt---tttatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag
|||||  |||| || ||||| || ||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||||| || |    | | |  | |||||| ||    |  |||  || | ||||  |  | |  || | |       | ||  | |    ||| ||| | ||                      
GTTCCGAACTTATATTGCATTGGAGATGCCAATGGTAAACTCATGCTTGCTCATGCTGCCAGTGCACAGGGAATCTCTGgtacattgcaaatctgtttagatttca-tcttcttctatcgctcctatgttgct--tatcgtatagttgcctgataag--taattcctatgaaaatgtag---------------------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatcaatatttcac--tccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag
|||||  | ||||| || || || ||||||||||| ||||| ||||| |||||||| || ||||| |||||||| || |||| ||      || | |  |||||  |   | || | |||       | ||||   || | |  ||||   ||    ||      ||   || |   ||  |  |  |           
GTTCCAAATTTGTATTGTATTGGAGATGCCAATGGCAAACTCATGCTGGCTCATGCTGCCAGTGCACAAGGAATCTCAGgtagata-cagaataatttgttcactgttttattgta-cttcagcgcatatttcgggttttgctttgaactagtgtagttctttgataactaatttcttgtctgaatatag---------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag
|||||  | || || || ||||| |||||||||||||| || ||||||||||||||||| || || |||||||| || |||||||| | |  |||    ||   |  |              |  |   |    ||||     ||  |  |    |||  ||  ||  |                            
GTTCCTAATTTATATTGTATCGGAGATGCCAATGGTAAGCTCATGCTTGCTCATGCAGCCAGCGCACAAGGAATCTCAGgtaaatgttgtgctcacctgtttcttttatccatgctcgatgctgatcactatagttcttatacgagcaaat---gttggtctgaatatag---------------------------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G152958_T02 (Zea mays), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctt-tattaaactctatgcatctacttgtgttggctag
|| ||| | || || ||||| || ||||||||||| || || |||||||| ||||| || ||||| ||||||||||| ||||  ||         | | |||  |     ||    ||  |   |  |     ||  |  |||   |   | |  ||||| |  |||| || | ||                      
GTACCCAATTTATATTGCATTGGAGATGCCAATGGCAAGCTCATGCTTGCCCATGCTGCCAGTGCACAAGGAATTTCAGgtacttg---------agagttcctttttcttgtggtttcttggagcatgcttattggtgtact---tgtctgatgttgacttcctattcaaatgtag---------------------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag
|| || || || ||||| || |||||||| ||||| ||  |||||||||||||||| || ||||| ||||||||||| ||||| ||||        || ||  | | |||   || ||  ||||   |    | |  |    |||| |  || |  | ||                                     
GTGCCTCATTTATACTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGgtaagtggtaactcatgtaattttcccaaaa---attttagtttttgctgcaatatcatttgatgaaaaaatt-gtctaacag-----------------------------------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA09G04270.1 (Glycine max), 5'ss of exon 5

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttt-tatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag
||||| || ||||| ||||| |||||| | ||||| ||  |||||||||||||||| || ||||| ||||||||||| |||||   |    ||     ||||  || | |||   |   || |||| ||    |    ||     ||||   | | | ||                                      
GTTCCTCATTTGTATTGCATTGGTGATACAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGgtaagaagcaagtaatgtaattttgctactaatatttgagtcatttgcttccattcacttaatgaaaatattgttgttggaaag-----------------------------------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag
|| || || || || || || |||||||| ||||| ||  |||||||||||||||| || ||||| ||||||||||| ||||| ||||   |   || |  |  | | ||    |  ||  |       |    ||  |     ||   ||   |  |                                       
GTGCCTCATTTATATTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGgtaagtggta--actgatgtaacttttccaaaatttagtttatgcagcaatatcatttgatgaaaaaattgtctaacag---------------------------------------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G15310.1 (Glycine max), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttt-tatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatac-gttagattgacctttattaaactctatgcatctacttgtgttggctag
||||| || ||||| || || |||||||| ||||| ||  |||||||||||||||| || || || ||||||||||| |||||   |    ||     ||||  || | |||   |   || |||| ||    ||   ||     || |  ||| ||| |                                       
GTTCCTCATTTGTATTGTATTGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGCGCACAAGGAATTTCAGgtaagaagcaggtaatgtaattttgctactaatttttgagtcatttgcttccatttacttaatgaaaagattgttggatag---------------------------------------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S112_186V6.1 (Physcomitrella patens), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatca-atatttcactccaaatgcatctttcttttgtttttccttttcta---cactgaatacgttagattg-acctttattaaactctatgcatctac-ttgtgttggctag-----
|| || || |||||||||||||||||||| ||||| ||  ||||||||||||||||||| || || ||||| ||||||||| |||  || ||     |   ||      || |||| |   ||   |  || |  || |     | ||| |    ||    | ||  ||  | |  || ||  || | | ||   ||  |  |     
GTACCGCATTTGTACTGCATCGGTGATGCAAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCCCAAGGCATTTCTGgtgaatcattctactgtgttcctcgaattgaa-gcatttacattagatccttgccattgttggttattgagtgtcgtactcggcactgttccttatgtcgataaatttgcgttaccttttcatgaacag

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S352_68V6.1 (Physcomitrella patens), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgta-----aatggtttta---tcaatatttcac-tccaaatgcatctttcttttgtttttccttttctacactg-aatacgttagattgacct--ttattaaactctatgcatctactt-gtgttggctag---------------------------------------
|||||  |  | || || || ||||| |||||||| ||| ||||| | || |||||||||||||| ||||| || |||||||     | ||| | ||     ||||  | |  |    ||  || | | | ||| ||||  |  || |  ||  ||| | | | |   |     |  ||  || | ||  ||  | ||  || |   |                                         
GTTCCGAATCTTTATTGTATTGGTGACGCCAATGGGAAAATGATGTTAGCACATGCAGCTAGTGCCCAAGGCATCTCTGgtatgtcaattggctctaagacaaataaatgaagtatttatttatatatttattgatttttatcctcaatgctccaatgcttcaaagctattcgatggttccacgcaattgataaattttatgatattttagtttgaagtccttaccgagttaatgactttcttttacag

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: PP1S35_94V6.1 (Physcomitrella patens), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggt---------tttatcaatatttcactccaaatgcatctttctt----ttgtttttcctttt-ctacactgaatacgttagat-tgacctttattaaactct-atgca---tctacttgtgttggctag----------
|| || |||||||| |||||||| ||||| ||||| ||  ||||||||||||||||||| || |||||||| ||||| |||   |  |         ||  ||   |||  |   | ||       ||| |    || | ||    |||  |  | ||| || |    || | ||   |   |   ||| |   |   || |  || ||||| |            
GTACCACACTTGTATTGCATCGGCGATGCAAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcatacgaccctgttcctcgggattgaagcgctaacattggattcataacattatattcatatttattttattgattatgggcaatctcactcgtcccagtttctcacataaaatcgatatgcgttggttttttatgaacag

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: EFJ06739 (Selaginella moellendorffii), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag
|| || || |||||||||||||| ||||| ||||| ||||||||||||||||| || || |||||||| || ||||| |||||    | |    |         |     || || |  |  |  |  |  || || | ||                                                        
GTACCTCATTTGTACTGCATCGGCGATGCAAATGGCAAACTGATGCTTGCTCACGCTGCCAGTGCTCAGGGCATTTCAGgtaa----tctcgagagagacatgttttgtgtg-atgtgaccgtgatcgtgtctcttttgcag-------------------------------------------------------

upper sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: EFJ16882 (Selaginella moellendorffii), 5'ss of exon 10

GTTCCCCACTTGTACTGCATCGGTGATGCCAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggttttatcaatatttcactccaaatgcatctttcttttgtttttccttttctacactgaatacgttagattgacctttattaaactctatgcatctacttgtgttggctag
|| || || |||||||||||||| ||||| ||||| ||||||||||||||||| || || |||||||| || ||||| |||||    | |    |  |      |    ||| || |  |  |  |  |  || || | ||                                                        
GTACCTCATTTGTACTGCATCGGCGATGCAAATGGCAAACTGATGCTTGCTCACGCTGCCAGTGCTCAGGGCATTTCAGgtaa----tctcgagagaaacatgttttgtatg-atgtgaccgtgatcgtgtctcttttgcag-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|163978174|gb|ES062735.1|ES062735

EST:     CAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTG                         TGGTGGAGCAAGTCACAGGTAGAG
genomic: CAATGGTAAACTGATGCTTGCTCATGCAGCTAGTGCTCAAGGAATTTCTGgtaaatggtt ... tgttggctagTGGTGGAGCAAGTCACAGGTAGAG

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns