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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCCCTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGATACGgttagaattaacacccctacaaaaatataatttccatctaatatccttactttaatgtcctaactcaattttactctgaag

Basic information

species Arabidopsis thaliana
transcript AT4G04850.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G06890.3 (Glycine max), 5'ss of exon 10
TGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCCCTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGATACGgtta-gaattaacacccctacaaaaatataattt----ccatctaatatccttactttaatgtcctaactcaattttactctgaag-------------
||||||||| ||||| ||||| || |||||||| || |||||| | || || ||||||||||||||||| || || ||     | || || || || ||||||  | |||  |        |  | | ||||||       |  |  ||| |||  || |  |  |||||  |   |  | ||||              
TGTTGCAGATACAAGGAGCTCTGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCTGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACACGgttccgtattttccaatgcttaggattttaatttgggattgtggagaatcattaaattga-atattaacttgacaattgtatgaaatatcataatgcag

upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 11
TGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCCCTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGATACGgtta-gaattaac--acccctacaaaaatataattt----ccatctaatatccttactttaatgtcctaactcaattttactctgaag-------------
||||||||| ||||| |||||||| |||||||| || |||||| | || || ||||| ||||||||||| || || ||     | || || || || ||||||  | |||  |  |  | ||   |  | ||||||       |  |  ||| |||  || |  |  |||||  |   |  | ||||              
TGTTGCAGATACAAGGAGCTCAGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCAGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACACGgttccgtattttccaatgcttaaggatttttaatttgggattgtggagaatcattaaattga-atattaacttgacagttgtgtgaaatatcataatgcag

upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 10
TGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCCCTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGATACGgttagaattaacacccctacaaaaatataatttcca--tctaata-tccttactttaatgtcctaactcaattttactctgaag-----
|||||||||| |||| || || ||||||||||| || |||||| | || || |||||||||||||||||||| || ||   | | || ||||| || |||||| |  ||| |     || ||| ||| | | ||||  | | | | |  |    || | | | | ||| | ||| |   |   |     
TGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACACGgtttg--ttatcttgttta-aaagataaagtatccaagtttgacaattttcgggtttaggccattactgactttgatcttattgtgcag