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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattag

Basic information

species Arabidopsis thaliana
transcript AT4G00630.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 10
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgat---tttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattag
 ||||| || |||||||||||||| ||||| |  |||||||||||||| || || |||||||| || |||||| |||| || ||| | ||||||||  |||| |||  |  ||    ||   |  | |   |||   | ||   || ||     |   |||  |||  |     ||   | ||                
TCGGCCTATTTACAAGCAAATTGCTGAAAATCAGAATGCTGAGATATTTTCAGCAAATACACTCCTTGTTATTTTTGGCACAAGTCTTCTTACAGCCCGGgtttgtattctatatgcttattttctagcctttgcactgcttaaaagttaaaactacttttgattttatggtacta--ctattcacag-----------

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G093643_T01 (Zea mays), 5'ss of exon 11
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgat---tttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattag
 ||||| || ||||| |||||||| ||||| |  |||||||||||||| || || |||||||| || |||||| |||| || ||| | ||||||||  ||||  ||| |  ||   |||   |  | |   ||    | ||   || |    ||  | || || |   || | |                         
CCGGCCTATTTACAAACAAATTGCTGAAAATCAGAATGCTGAGATATTTTCAGCAAATACACTCCTTGTTATTTTTGGCACAAGTCTTCTTACAGCCCGGgttcgttttctatatgtttattttctagcctttacattgcttaaaactactattgattttatggtctattcacag------------------------

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA09G39770.1 (Glycine max), 5'ss of exon 14
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgattttccgtgttggtgcttggtattctcgtaattttg---ctttgtcttttgtttcgttaagataaattgtttctttctttaaattag--
 || || |||||||||||  |||||||||| | |||||| || || ||||| ||||||||||| || ||||||||||| || ||| | |||||||| || ||||||  |   |  |  ||  |  |||||   ||| |     |||||    |||||   || |   |||   ||  |||||     |    |||||    
TCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATTTTCTCAGCCAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGAgtatgtcatatgtgatt-gtcctattgcttttcattttatcctttttgggtgtttgttccttctcatgtttttatttattgtagaaatgagcaaatttttc

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 18
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattag----------
 || || |||||||||||  |||||||||| | |||||| || || ||||| || |||||||| || ||||||||||| || ||| | |||||||| |||||||||  |   |  |  ||  |  |||||  |||| |    ||  | ||| |   |||||| | ||   ||   ||  ||| || |  |||| ||          
TCGACCAATATACAAGCAGGTTGCAGAAAATCAAAATGCAGAAATTTTCTCAGCTAATACACTCCTTGTTATTCTTGGCACAAGTCTTCTTACAGCCAGGgtatgtcatatgtgatt-gtcctattgctttttatttt----atccttcttgggtgtttgttcc-ttctcatgtttttgttcattgtagaaatgagcaacttttca

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G08030.1 (Glycine max), 5'ss of exon 10
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttc---gttaagataaattgtttctttctttaa--attag---------------------------------------------------------------------------------------------------
 ||||| ||||| ||||| |||||||| || | |||||| || ||||| || |||||||||||  | |||||||||||||||||  | || ||||| |||||| ||  |        | |   | || ||  | ||  | | ||||  | |||  ||  ||||    | ||||  ||  | |  |  | || ||   |||                                                                                                    
TCGGCCCATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACTAGCCTTCTCACAGCCAGGgtaggtgtt--------cataccgatgttttttctttcccttatttccccttggtttgggtttttgagctaagccaaggtttgacagttttcaacagttattcttgtgtccgttgaagtgatgagatgacttttttttttggtgtgccaaccttacttttacccctttttttaaaaataatttttctttacttaaaacag

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA03G01600.1 (Glycine max), 5'ss of exon 4
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtctttt--gtttcgttaagata-aattgtttctttctttaaattag---
 || || ||||| ||||| |||||||| || | |||||| || ||||| || |||||||||||  | |||||||||||||| ||  | || ||||| |||||| ||  |    |  |  ||||  | |||    || |      |||| || |  ||||  | |  |  ||| |      |||||     |||   | |   
TCGACCTATATATAAGCAGATTGCAGAGAATCAAAATGCAGAAATATTTTCTGCCAATACACTCTTTGTTATTCTTGGGACCAGCCTTCTCACAGCCAGGgtaggtgttca--taccaatgtttttcctttcccttatttcccctttgtttgggtttttgagctaagccaaggtttggcagtttcaacagttattcttgtgt

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 9
GCGGCCGATATACAAGCAAATTGCAGAAAACCGAAATGCTGAGATATTCTCCGCCAATACACTTCTGGTTATTCTTGGGACTAGTTTACTTACAGCTAGGgtatgttcttgattttccgtgttggtgct-tggtattctcgta---attttgctttgtctt--ttgtttcgttaagataaattgtttctttctttaaattag
  | || || || ||||||||||| ||||| | |||||| |||||||| || |||||||||||||| |||||  | ||||||||| | |||||||| ||||||| |   || |||||    ||  |  | |  | ||||  ||   ||   | | |||||   || |||| |||||| |||   |   |||  || ||    
TAGACCAATTTATAAGCAAATTGCTGAAAATCAAAATGCAGAGATATTTTCTGCCAATACACTTCTTGTTATCTTGGGGACTAGTCTCCTTACAGCCAGGgtat-tggatgcttttcataattattattattcttttcttataccaatcaagttgtgtctcccttttttccttaagaaaaa--atcatttttcttgaacag-