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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAAGAGAAGACAAATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttcttttttttttttttttttttcttttttctttttctcgttatagggttgccctgcccctaagtgtctgacagtaactctctgtttgatccctgtcttttgtaactttttttgatttgtttaacgctgagattctatattatag

Basic information

species Arabidopsis thaliana
transcript AT3G61480.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA18G47050.1 (Glycine max), 5'ss of exon 10
CTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAAGAGAAGACAAATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttcttttttttttttttttttttcttttttctttttctcgttatagggttgccctgcccctaagtgtctgacagtaactctctgtttgatccctgtcttttgtaactttttttgatttgtttaacgctgagattctatattatag
 |||||||||||||||||||| || |||||||| || || || || |||||| |  | |||||||| || ||| |||||||||| || ||||| ||||||||||        ||   ||| |  || ||||  ||||| |   |      ||    |||  |   ||| |   | ||  ||   |      |    ||||  |     ||  ||||||  | |   | | | ||  ||   |||   || |  |                                       
TTCAGTTGAACTATTTTGGGTCACCTGTGGTCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaa-------actgttaaggtctttcttat--tcactgtatgtacatccctgaactttactaggtttatgactcttgattcaccctcaagtgtatttgcttt----ttacttgtctggtatttttttttttttacatggatgttcattattgcag-------------------------------------

upper sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA09G39270.2 (Glycine max), 5'ss of exon 10
CTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAAGAGAAGACAAATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttcttttttttttttttttttttcttttttctttttctcgttatagggttgccctgcccctaagtgtctgacagtaactctctgtttgatccctgtcttttgtaactttttttgatttgtttaacgctgagattctatattatag
 |||||||||||||||||||| || ||||| || || || || || |||||| |  | |||||||| || ||| |||||||||| || ||||| ||||||||||        ||   ||| |  || ||||  ||||| |   |    | | |    |||  |   ||| |   | ||  ||  | |  ||  |  || || |    ||   |||||    |||  | | |   |  |  | |                                                  
TTCAGTTGAACTATTTTGGGTCACCTGTGGCCAGTCTGAGGATAAAACAAATTTGATTGAGGAAGTTTCATGGTTAGATTATGGTCATCGAGGCATGCAGgtaa-------actgttaaggtctttcttat--tcactgtatgtaca-tccctgaactttactaggtttatgactcttaattcaccctctagtgtatttcctttttact---tgtctt---gtatttttttacattgttgcag--------------------------------------------------

upper sequence: AT3G61480.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 5'ss of exon 10
CTCAGTTGAACTATTTTGGGTGACATGTGGTCAATCGGAAGAGAAGACAAATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctctgcttcaaagctgcttgttatgctcacttttcttcttcttcttttttttttttttttttttcttttttctttttctcgttatagggttgccctgcccctaagtgtctgacagtaactctctgtttgatccctgtcttttgtaactttttttgatttgtttaacgctgagattctatattatag
 || |||||| |||||||||| || ||||||||||| || || || || || ||  | |||||||| || ||| | |||||||| ||  ||||||||||||||||            |  |||||     || ||  | |     || ||    |     ||||| |   | |   ||||    |||  |||  |  |        | ||  ||||||| | ||  |    ||| ||  | | || |||                                            
TTCTGTTGAATTATTTTGGGTTACCTGTGGTCAATCAGAGGAAAAAACGAACCTAATTGAGGAAGTTTCATGGTTGGATTATGGCCATAGAGGAATGCAGgtaat------------agactgctc----tggtc--tatatcagtttttgaaataccagtttttctagctttaaattctgcacctctctattagcctatttcattcttacttgtctgata-tagattatggttggaagcttatcatttcag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875149|gb|AU235980.1|AU235980
EST:     ATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAG                         GTTNGGTATCCTTCTCTAGGGGATGATTCCTTTTNTGCCTNGAGGATTTCC
genomic: ATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctc ... tatattatagGTTTGGTATCCTTCTCTAGGGGATGAT-CCTTTTATGCAA-GAGGATTTCC
EST: gi|164054095|gb|ES172084.1|ES172084
EST:     ATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAG                         GTTTGGTATCCTTCTCTAGGGGATGATCCTTTTATGCAAGAGGATTT
genomic: ATCTTGTCGAGGAAGTATCTTGGCTAGATTATGGACACCGAGGAATGCAGgtaattcctc ... tatattatagGTTTGGTATCCTTCTCTAGGGGATGATCCTTTTATGCAAGAGGATTT