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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAATCAGGCGAGAATTTGCAGATTGCACTGTCATTACAGTTGCTCACCGTATCCCTACCGTTATGGATTGTACAATGGTTCTCTCCATCAGCGACGgtgagtgttgttgcatcattttgatctttttctcctctgaatctgtttttgatgggttttggttgcattttag

Basic information

species Arabidopsis thaliana
transcript AT3G59140.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os06g06440.1 (Oryza sativa), 5'ss of exon 10
AAAACAATCAGGCGAGAATTTGCAGATTGCACTGTCATTACAGTTGCTCACCGTATCCCTACCGTTATGGATTGTACAATGGTTCTCTCCATCAGCGACGgtgagtgttgttg--catcattttg------atctttttctcctctgaatctgtttttgatgggttttggttgc--attttag------------------
|||||||||||   ||| ||   |||||||||||| ||||| ||||| |||||||| || || |||||||| || |||||||| ||  | || ||||| |||  || ||  |   |  ||  ||       || | ||| |||| ||| ||  | | | |||| |      | |  ||| | |                  
AAAACAATCAGAACAGAGTTCAAAGATTGCACTGTTATTACTGTTGCACACCGTATACCAACAGTTATGGACTGCACAATGGTCCTTGCAATGAGCGATGgtacgtctttcttaccgccaacttattagaaatatatttatcctgtga-tcattgtctaatggatcagcactacttattctggaatatatggattatactt

upper sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G28890.1 (Glycine max), 5'ss of exon 18
AAAACAATCAGGCGAGAATTTGCAGATTGCACTGTCATTACAGTTGCTCACCGTATCCCTACCGTTATGGATTGTACAATGGTTCTCTCCATCAGCGACGgtgagtgttgttgcatcattttgatctttttctcct---ctgaatctgtttttgatgggttt-tggttgcattttag-------------------------
||||| || ||    || ||||||||||| || || || ||||| |||||| | || ||||| || |||||||||||||||||||| || ||||| || |||  ||  | |   |  | ||  || || | |   |   |  | | |  ||  ||   ||   |   |  ||||                            
AAAACCATTAGAACTGAGTTTGCAGATTGTACCGTGATCACAGTGGCTCACAGGATACCTACTGTGATGGATTGTACAATGGTTCTTTCAATCAGTGAAGgtaggttgtatatta--acttccattttataccatttaacaaattttaattaagactagtccataactctatttccatttttctaatgttgatgtcaaaata

upper sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G28910.1 (Glycine max), 5'ss of exon 12
AAAACAATCAGGCGAGAATTTGCAGATTGCACTGTCATTACAGTTGCTCACCGTATCCCTACCGTTATGGATTGTACAATGGTTCTCTCCATCAGCGACGgtgagtgttgttg-catcattttgatctttttctcctctgaatctgtttttgatgggttttggttgcattttag------------------------------
||||| || |||   || |||||||||||||| || || ||||| || ||| | || || ||||| |||||||| || ||||||||||| |||||||| ||| | |    | | || |   || ||||  | |  |    || |  |||||||    ||  |  |   |  ||                               
AAAACCATTAGGACTGAGTTTGCAGATTGCACAGTGATCACAGTAGCACACAGGATACCAACCGTGATGGATTGCACTATGGTTCTCTCAATCAGCGATGgtaaattgcatagacaacccctttatctcatgcaac---aaaccgttttttgactaatta-gactaattcataactctatttccactttcttatgttgacgtca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124915321|gb|EH989195.1|EH989195
EST:     CCGTATCCCTACCGTTATGGATTGTACAATGGTTCTCTCCATCAGCGACG                         GACGGATTGTGGAGTATGATGAGCCAATGAAGTTGA
genomic: CCGTATCCCTACCGTTATGGATTGTACAATGGTTCTCTCCATCAGCGACGgtgagtgttg ... tgcattttagGACGGATTGTGGAGTATGATGAGCCAATGAAGTTGA