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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTTCTACAGATATAGTCTGCCCTATGTACATGCGGGTTTGGGACATCATCAAGATTGCACTTGATCAAAATGAATCACGGCCGTTGATATTATGCGAgtatgttagatcaatttcttcatttttcctgaattgcatttggcatcatataggccaatttattgcatcattgtttagatttcatgtttcttttgtgtctacttgagagattttcttcttaataaaacacag

Basic information

species Arabidopsis thaliana
transcript AT3G54440.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54440.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 5'ss of exon 10
CAAGTTCTACAGATATAGTCTGCCCTATGTACATGCGGGTTTGGGACATCATCAAGATTGCACTTGATCAAAATGAATCACGGCCGTTGATATTATGCGAgtatgttagatcaatttcttcatttttcctgaattgcatt--tggcatcatataggccaatttattgcatcattgtttagatttcatgtttcttttgtgtctacttgagagattttcttcttaataaaacacag
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CTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGTTTGGGACATTGTAAAGATTGCAAAAGATCCAACTGAAATGCGACCTTTGATTCTATGCGAgtatgttc------ctttttcagtttt--tgatttacaaaaatgttgtaatgtacccaaattcaatcctt--ttgacaatgccaattgatttgcataaatatacttataaaaatgttcaactgtcag-------