1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaatagatcttccttcctcctagccccatacttaatttggagtcattaatcagactttctgcttttgaatctggtgaatgtgtag
species | Arabidopsis thaliana |
transcript | AT3G52850.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAG GTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGCTTTTTGTGGATCCEST: gi|125191616|gb|EL206570.1|EL206570
genomic: CAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaa ... gaatgtgtagGTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGCTTTTTGTGGATCC
EST: CTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAG GTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGTCTTTTTGTGGATCEST: gi|125241655|gb|EL255740.1|EL255740
genomic: CTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaa ... gaatgtgtagGTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAG-CTTTTTGTGGATC
EST: CAGCTGCAGCAACGGTTTGCTTTACACGCGTGAGCACGACACTTGCATAG GTTCAGGCAAAGTTGGAACCACAAAACTCAG
genomic: CAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaa ... gaatgtgtagGTTCAGGCAAAGTTGGAACCACAAAACTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaatagatcttccttcctcctagccccatacttaatttggagtcattaatcagactttctgcttttgaatctggtgaatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG