Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGAATCAAGTTTGTAAAGTCGACTTGGCCTTCCAAGAAAAAAGAGAAGTATGATCAAGAGTCCCTTGTCAAAGGCCGTAATGAGCCTTGTTTAGTCAGgtgagtgtagcttctagattaaaatcttgtcaaatccataagcatatacagtcttcgaacaattcttaggcaatcattttcttctccag

Basic information

species Arabidopsis thaliana
transcript AT3G52390.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52390.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA19G38780.1 (Glycine max), 5'ss of exon 10
CCGGAATCAAGTTTGTAAAGTCGACTTGGCCTTCCAAGAAAAAAGAGAAGTATGATCAAGAGTCCCTTGTCAAAGGCCGTAATGAGCCTTGTTTAGTCAGgtgagtgtagct-tctagattaaaat--cttgt---------caaatccataa---gcatatacagtcttcgaacaattcttaggcaatcattttcttctccag
| |||||    ||||| || || || |||||||| ||||| |||||||||||||||||||||| | |||| |||||||| ||||| ||||||||||| | || ||||      | | | ||||  |  |||||         ||| |  || |   |||| || |   ||     | |      ||||  | | ||||||    
CTGGAATTGGTTTTGTTAAATCTACATGGCCTTCTAAGAAGAAAGAGAAGTATGATCAAGAGTGCATTGTTAAAGGCCGCAATGAACCTTGTTTAGTTAAgtaagtgggatggttttgcttaagctggcttgtgccaacttccaagtttattaactgcatctatatcattttggtactatggccgcaagaaatatcttct----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083780|gb|DR379539.1|DR379539
EST:     TATGATCAAGAGTCCCTTGTCAAAGGCCGTAATGAGCCTTGTTTAGTCAG                         GCAAGTCCTTGAAGTGGTGGCTGGCTACAAAGGACTTGGCGATCTAAATCA
genomic: TATGATCAAGAGTCCCTTGTCAAAGGCCGTAATGAGCCTTGTTTAGTCAGgtgagtgtag ... tcttctccagGCAAGTCCTTGAAGTGGTGGCTGGCTACAAAGGACTTGGCGATCTAAATCA