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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGgttagcctgtgacctatagcgtcaatgaaattctgtgatctgtgccaccttaggctgctctttattctttccctatattcaaagatggttaagcagctaa...

Basic information

species Arabidopsis thaliana
transcript AT3G51150.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51150.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G24250.1 (Glycine max), 5'ss of exon 8
AACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGgttagcctgtgacctatagcgtcaatgaaattctgtgatctgtgccaccttaggctgctctttattctttccctatattcaaagatggttaagcagc-taa
| ||| |||| ||| ||   |||||||| || ||||||||||| ||| | || ||||| || ||||||||||| |||||||||||||| || || || |||||||| |   |  | |    |  |  |  |  | |  ||      |       |  |||  ||| ||||     | | |  |||   |||| |  | | |
AGCGTTCATCCCAAACAAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTCTAGGAACTGTCATCCGCAAACTGAGgttagcttacaaagtttgcaattcaatatttattttactcaactaaatgcacaccgtctccatatccttttagcct-tacgcagaactttaacccccatga

upper sequence: AT3G51150.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 8
AACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGgttagcctgtgacctata-gcgtcaatgaaattctgtgatctgtgccaccttaggctgctctttattctttcc-ctatattcaaagatggttaagcagctaa
| || ||||| ||| |    |||||||| || ||||||||||| ||| | || ||||| || ||||||||||| || ||||||||||| || || || |||||||| | | |  | |     |||||     | | |  ||  |   |       |   ||  ||| |||| | |  ||  || |  |  |||| |  |   
AGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTCTTGGAACTGTCATACGCAAACTGAGgttagcttataaagtttgcatttcaatatttatttttactcaattaaatgcacaccgtttcgatatccttttcgccttacccagaact--ttaacccacatg

upper sequence: AT3G51150.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA01G37340.1 (Glycine max), 5'ss of exon 7
AACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGgttagcctgtgacctatagcgtcaatgaaattctgtgatctgtgccaccttaggctgctctttattctttccctatattcaaagatggttaagcagctaa----
| || ||||| ||| |    ||||||||||| || |||||||| ||| | || ||||| || || |||||||| ||||||||||| || || || || |||||||| | |||   | |  ||   | ||  | |||||  |     |    ||     |   ||     || || ||   |    |  ||     || ||    
AGCGAGCATCCCAAACCCATTCAGCTGGCACGAGATTGAAAGAGGGTTGCCACATAAATCGTAGCTTACTAACTCTAGGAACTGTTATCCGCAAACTCAGgttagcttatga---agattgtgtttcaatatttgtgacttccctgattgcagaaca-tgagtacatgctcactttaagaattttttattctcttgccaaggag

upper sequence: AT3G51150.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA11G07950.1 (Glycine max), 5'ss of exon 8
AACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGgttagcctgtgacctatagcgtcaatgaaattctgtgatctgtgccaccttaggctgctctttattctttccctatattcaaagat----ggttaagcagctaa
| || ||||| ||| |    ||||||||||| || |||||||| ||| | || ||||| || || |||||||| ||||||||||| || || || || |||||||| | |||   | |  ||   | ||  | |||||  |     |    ||        |   | ||  |  | |   |||  |     |  ||| ||| | 
AGCGAGCATCCCAAACCCATTCAGCTGGCACGAGATTGAAAGAGGGTTGCCACATAAATCGTAGCTTACTAACTCTAGGAACTGTTATCCGCAAACTCAGgttagcttatga---agattgtgtttcaatatttgtgacatccctaattgcagaacatgactacatattcactcaaaaaaaaatttctcttgccaaggagcca-

upper sequence: AT3G51150.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 5'ss of exon 8
AACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGgttagcctgtgacctatagcgtcaatgaaattctgtgatctgtgccaccttaggctgctctttattctttccctatattcaaaga--tggttaagcagctaa--
| ||||||||||| ||||||||||||||||||||| ||||||||||| | || |||||||| |||||| |||| || |||||||| || || |||||||||||||  | | |  | ||   ||  |    || | |  | | |  ||  || |  | |   | |   | |   | |   |  |||    ||  |     | |  
AGCGTGCATCTCAGTCATTATCAGCTGGCACAAGGCTGAAAGAAGGTTGCCACATAAACCGCAGTTTATTAACCCTGGGAACTGTTATCCGTAAGCTAAGgttagatt-ttatttttat--tctttttttttatatattttttttcatttt-gtttacaagtaagcatctggttgttccccgagaatcagtccatgtattcatg