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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaactcatcaactagagttatatgttccattcgtacgttttctttattcacaactctaccttttctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G51130.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 10
TATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaactcatcaactagagttatatgt-tccattcgtacgttttctttattcacaactctaccttttctgcag---------
|||||||||||| ||||||  ||| |||   |||||| ||||||||||||||||||| || ||||||||||||||| |||||||| | ||||||||  ||||  | |||| |     |    || | | | | |||    ||        || |   |||||   | | ||||            
TATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCTTATTTGATGGACAGgtttgtaacttacatcatgcttttgtttctatacatagtgacacaactgataatagaaactcctacatgtctgttttattttcag

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 10
TATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact--catca-actagagtt---atatgttccattcgtacgttttctttattcacaactctaccttttctgcag---------
|||||||||||| ||||||| ||| |||   |||||| ||||||| || |||||||| || ||||||||||||||| |||||||  | ||||||||  ||||  | ||||  |||||  ||   |||   |||   |         |        || |   |||||   | | ||||  |         
TATTCATTCTGCTTCAGATCTTCGGCCACGGACAACTCTCTGTGGAGACTACTTTTATAATTATTTTACTCGTGGTCTGGACATATTATTTGATGGACAGgtttgtaacttacatcatgcttttgtttctatacaatgtgccacagcacaactgataatggaaactcccacatgtctgttgtattttcag

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 10
TATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaactc-atcaacta--gagttatatgttccattcgta-cgttttctttattcacaactctaccttt---tctgcag---------------------
 ||||| ||||| ||||||||||| |||   |||||| |||||||||||||||| ||||| ||||||  ||||||||||||||| || ||||||||  |||||      |  ||    |    |  ||||| || | |   ||   || |   |||  |  |   ||| |     |   |||                     
AATTCACTCTGCCTCAGATCCTCGCCCACGGACAACTCTCTGTGGTGATTACTTCTACAATTATTTTGATCGTGGTTTGGACATACTATTTGATGGGCAGgtactcctttttattgtgtgtcaaaatatatattacttcaataatattgtgcatatatatcatcgtacttgaaagttctcagattattgtattggatttgcag

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: EFJ28090 (Selaginella moellendorffii), 5'ss of exon 9
TATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaactcatcaactagagttatatgttccattcgtacgttttctttattcacaactctaccttttctgcag
||| || || || || |||||  | || ||  || |  | |||||||| |||||||||||||||||| ||||||| || |||||||| || || ||  ||||    || |  ||             | || | |||   ||  ||  | | ||   |   | |  |  ||||||
TATACACTCGGCATCGGATCCGAGGCCGAACTCAGCCCTTTGTGGTGACTACTTTTACAACTATTTTGCTCGTGGCTTAGACATCCTTTTCGACGGTCAGgtgaataattagtc-------------tttttctttc---cgagtttgtgactctggaaatttctatcactgcag

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: EFJ29519 (Selaginella moellendorffii), 5'ss of exon 9
TATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaactcatcaactagagttatatgttccattcgtacgttttctttattcacaactctaccttttctgcag
||| || || || || |||||  | || ||  || |  | |||||||| |||||||||||||||||| ||||||| || |||||||| || || ||  ||||    ||||  ||   |         | |   |  |      ||||| |     ||                  
TATACACTCGGCATCGGATCCAAGGCCGAACTCAGCCCTTTGTGGTGACTACTTTTACAACTATTTTGCTCGTGGCTTAGACATCCTTTTCGACGGTCAGgtgaataactagtcttttccttccgagtttgtgaccctggaaatttctatcactgcag-----------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164074101|gb|ES036573.1|ES036573
EST:     ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAG                         ACTCACAAAAGTTAAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATG
genomic: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact ... ttttctgcagACTCACAAA-GTTAAAAA-GTTTGTTCTTCACACCAACTATCCGGGTCATG
EST: gi|86077729|gb|DR373486.1|DR373486
EST:     ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAG                         ACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCT
genomic: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact ... ttttctgcagACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCT
EST: gi|164121570|gb|ES014816.1|ES014816
EST:     ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAG                         ACTCAACAAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATG
genomic: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact ... ttttctgcagACTCA-CAAA-GTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATG
EST: gi|125041928|gb|EL114197.1|EL114197
EST:     TTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAG                         ACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCT
genomic: TTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact ... ttttctgcagACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCT