Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgttccgcttctctctcgctccactgatctttttattgaaagacatctctctagaaacaatttgaataacgcaattagttcgtgttttatcttttaccaacatcgcag

Basic information

species Arabidopsis thaliana
transcript AT3G45240.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45240.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G29640.1 (Glycine max), 5'ss of exon 9
AAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgttccgcttctctc--tcgctccactgatctttttat-tgaaagacatctc-tctagaaacaatttgaataacgcaattagttcgtgttttatcttttaccaacatcgcag
 | | || | || |||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||| || || ||||||||||| || |||||||| ||    | | | |        || || || || |||  |   |  ||| |   ||      ||  | |  |  | |||  |  | |    | |   ||     |    |||
TAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATTTTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAgtaagacatatgttaacttaccctctaatattattacgtagtattcatgttacctgtttttaaccttaccacagaaatctgagcttacagttttccttcttttctatccag

upper sequence: AT3G45240.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G29640.2 (Glycine max), 5'ss of exon 9
AAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgttccgcttctctc--tcgctccactgatctttttat-tgaaagacat-ctctctagaaacaatttgaataacgcaatt--agttcgtg--ttttatcttttaccaacatcgcag
 | | || | || |||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||| || || ||||||||||| || |||||||| ||    | | | |        || || || || |||  |   |  |||  |  ||      ||  | |  |  | |||   || |      |||  |  ||| | | |     ||
TAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATTTTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAgtaagacatatgttaacttaccctctaatattattacgtagtattcatgttacctgtttttaaccttaccacagaaatctgagcttacagttttccttcttttctatccagatag

upper sequence: AT3G45240.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA13G40190.1 (Glycine max), 5'ss of exon 11
AAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgttccgcttctctctcgctccactgatctttttattgaa-agacatctctctagaaacaatttgaataacgcaattagttcgtgttttatcttttaccaacatcgcag
 | | || | || |||||||||||||||||||||||||| |||||||| || ||  ||||||||||||| || || ||||||||||| || |||||||| ||    | | | | |  ||   |   |  |  |||| |  |||  |    ||| |     ||    |  | ||   | |  | | ||  | |||   |       |||
TAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAgtaagacatatgt-taacttaccctctaataatattaagtagaattgatgctacatgtttttaacctgtcacaga-aatctgagcttactgtttcctcccttatccag

upper sequence: AT3G45240.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G07340.3 (Glycine max), 5'ss of exon 11
AAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgt------tccgcttctctctcgctccactga--------------tctttttattgaaagacatctctctagaaacaatttgaa-----taacgcaatta-----------gttcgtgttttatcttttaccaacatcgcag------------------------------
 | | ||||||| ||||||||||||||||||||||| || |||||||| || ||  ||||||| ||||| || || || ||||||||||| |||||||| ||      | | | | | | |   |  | | |              |  | || | |||||   || || || |||   | | ||     | || ||  ||            ||| |||||   ||  | || | ||| ||                               
TAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAgtaagaaatacacatgttttttattataattacaacaaaaatgtcattctgttttcgaaagttctcactttacaaagtttcttaactttttcacccagatattatacatggcattcatgtttatactggtgcctatatcacaatcttagcttgctgttttcttcctgatccag

upper sequence: AT3G45240.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA12G07340.4 (Glycine max), 5'ss of exon 11
AAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgttccgcttctctctcgctccactgatctttttattgaaa--gacatctctctagaaacaatttgaataacgcaattagttcgtgttttatcttttaccaacatcgcag
 | | ||||||| ||||||||||||||||||||||| || |||||||| || ||  ||||||| ||||| || || || ||||||||||| |||||||| ||      |     |   |    | ||  ||  |   |||  | |||     |    | | ||   |     |||  ||||  | ||   | ||| ||| |        
TAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACCCTTCAAGATACATATGACAAAgtaagaaatacacatgttttttattataattacaacaaaaatgtcattctgttttcgaaagttctcactttacaa--agtt--tcttaactttttcacccag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163970887|gb|ES197003.1|ES197003
EST:     TAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAG                         ATTGTTCACAACCCGTTGGTAAT
genomic: TAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgttccgcttc ... aacatcgcagATTGTTCACAACCCGTTGATAAT
EST: gi|164215257|gb|EL978001.1|EL978001
EST:     AATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAG                         ATTGTTCACAACCCGTTGGTAATACCGGAAGGACTCAATCCTCGTCTAAGG
genomic: AATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGgttccgcttc ... aacatcgcagATTGTTCACAACCCGTTGATAATACCGGAAGGACTCAATCCTCGTCTAAGG