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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCATCGAGCTGGAGAGCATGAGTATTGGACAGCGTGATGCATTGCTTGTTTTCCGTACCCTTTGCAAGgttggcttttttttatggttccatctctctattcttgactagctatttgtggtgcttatgtgacaatttttttaagttctgtatcag

Basic information

species Arabidopsis thaliana
transcript AT3G43300.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 11
GGGCATCGAGCTGGAGAGCATGAGTATTGGACAGCGTGATGCATTGCTTGTTTTCCGTACCCTTTGCAAGgttggcttttttttatggttccatctctctattcttgactagctatttgtggtgcttatgtgacaatttttttaagttctgtatcag
 || || ||  |||||||||||||||| | ||| |||||||| ||| | || ||||| || |||||||||||||| | | |        |  | || |   ||  ||  ||  |  |||||    |||| |   |   || |||| || | |  |||
TGGGATTGATTTGGAGAGCATGAGTATAGTACAACGTGATGCTTTGTTGGTATTCCGCACTCTTTGCAAGgttggttctct-----aactttaactatagctttgtggttaatttcttgtgaacattatat---atacttcttaatttatttgacag

upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 10
GGGCATCGAGCTGGAGAGCATGAGTATTGGACAGCGTGATGCATTGCTTGTTTTCCGTACCCTTTGCAAGgttggcttttttttatggttccatctctctattcttgactagctatttgtggtgcttatgtgacaatttttttaagttctgtatcag
 || || ||  |||||||||||||||| | ||| |||||||| ||| | || ||||| || |||||||||||||| | | |        |  | |  |    |  ||  ||  |  |||||    |||  |   |   || |||| || | |  |||
TGGGATTGATTTGGAGAGCATGAGTATAGTACAACGTGATGCTTTGTTGGTATTCCGCACTCTTTGCAAGgttggttctctc-----actttaacaatggcattgtggttaatttcttgtgaacattacat---atacttcttaatttatttgacag

upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 11
GGGCATCGAGCTGGAGAGCATGAGTATTGGACAGCGTGATGCATTGCTTGTTTTCCGTACCCTTTGCAAGgttggcttttttttatggttccatctctctattcttgactagctatttgtggtgcttatgtgacaatttttttaagt-tctgtatcag---------------------
 || ||||| || ||||||||||| ||| |||| |||||||| |||||  | || |||||||||||||||||||||||| |   |   |||  ||  |||||           |  |  |  |  || |||    ||||| | |  |  || ||| |                      
AGGGATCGACCTTGAGAGCATGAGCATTAGACAACGTGATGCTTTGCTGCTGTTTCGTACCCTTTGCAAGgttggctttctg--agtattctctccatctatcaaaagaagtattctcttcatatttttgtctgcattttctaatctgcctatatgattcctcactataacatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125003295|gb|EL075564.1|EL075564
EST:     TCCGTACCCTTTGCAAG                         ATGGGTATGAAAGAAGATAGTGATGAAGTCACAACCAAGACCCGTATATTG
genomic: TCCGTACCCTTTGCAAGgttggctttt ... tctgtatcagATGGGTATGAAAGAAGATAGTGATGAAGTCACAACCAAGACCCGTATATTG