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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAGAGGCTCGACTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgaacatatatctattaccgttaagactgccaaatagtatttatctcaaagagacgcattggttctattcaagaatttgaattcgcttctgcattgttttttttaatatatttcttttcttttgacag

Basic information

species Arabidopsis thaliana
transcript AT3G32400.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G32400.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os02g55150.2 (Oryza sativa), 5'ss of exon 5
GTTAGAGGCTCGACTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgaacatatatctattaccgttaagactgccaaatagtatttatctcaaagagacgcattggttctattcaagaatttgaattcgcttctgcattgttttttttaatatatttcttttcttttgacag
|||||   |||   ||| || ||  || | |||||||| || ||||| ||||| |||||||| ||||| || ||||||||||||||  |  ||  |||   |  ||||| ||  | ||  |    || | |      |  |||| |  |   ||| |    ||| |    |   ||| |||| | ||                        
GTTAGGAACTCTGTTAAGCTTAAGCGAGTGATGCAAACAATTCTTTCGTTGGGAAATGCATTAAACCAAGGAACTGCAAGGGgtgagtaattaagtatgttc--taagattg--atatgtttacgatatgatttttgcaaattgatctt--ccaacatgaagaaatacagtgcacatggtttctcttt-----------------------

upper sequence: AT3G32400.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G33930.1 (Glycine max), 5'ss of exon 11
GTTAGAGGCTCGACTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgaacatatatctattaccgttaagactgc-caaatagtatttatctcaaagagacgcattggttctattcaagaatttgaattcgcttctgcattgttttttttaatatatttcttttcttttgacag
 | ||    ||    ||  | |||||||||||||| || || |||||  |||| ||||| |||||||| || |||||||| |||||   || | || |  |  | |  | | | | |  || | | || |    | |||  ||      | |  || | |||  | ||     || | |    | |   |||                    
ATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGgtgagt-taaagctttagcattcaccatttcaccatcagaaatcatgtttgtg-gacaaataa----tgtagaaaagtttataatcaaacttggact----tctcagata--------------------

upper sequence: AT3G32400.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv04s0008g06530.t01 (Vitis vinifera), 5'ss of exon 14
GTTAGAGGCTCGACTAAACTAAAAAGAATCATGCAAACTATACTTTCCTTGGGCAATGCATTGAACCACGGGACTGCAAGGGgtgaacatatatctattaccgttaagactgccaaatagtatttatctcaaagagacgcattggttctattcaagaatttgaattcgcttctgcattgttttttttaatatatttcttttcttttgacag
 | ||    |||   ||| | |||||||||||||||||||| |||||  |||| ||||| || ||||| || || ||||| |||||    |     |||  ||    || |   |  |  |||| || | ||    |   |||   |  |  |||  || | || | | | ||| ||    |  ||  ||  ||                 
ATCAGGAATTCGGTCAAATTGAAAAGAATCATGCAAACTATCCTTTCACTGGGAAATGCTTTAAACCATGGAACAGCAAGAGgtgagttga-----attgtcg----gatta--atgtcctattcatgttaacatcataaattatatgaagacaaacatataaagt-gttactgtataaaataatt-gatccatc----------------