Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTTGCCTTGTCGCCATGGAGAAACCAATCTCTCTTAAACCCGAGCACATCCGGGATGAGAAAGTGAAGgtgattacagttttcttgatcacatctttagtttcaaacttttgtagaatcaagtgatatcttcatttgcattttcagccaattaatattaataacaactgactgatttcttaaatgaacttcag

Basic information

species Arabidopsis thaliana
transcript AT3G27300.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G27300.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
GTTCTTTGCCTTGTCGCCATGGAGAAACCAATCTCTCTTAAACCCGAGCACATCCGGGATGAGAAAGTGAAGgtgattacagttttcttgatcacatctttagtttcaaacttttgtagaatcaagtgatatcttcatttgcatttt-cagccaattaatattaataacaactgactgatttcttaaatgaacttcag
||||||||| | || || ||||| |||||| | ||||| |  || |||||||| |||||||||||||||||||||                   | |||||   |||||  |||  | | |   | |  | |||||  |    |||| | ||| | ||||  | | |  |||| |   || ||   |           
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtg-----------------tgcctctttccattcaa-ttttcatgggaattattactctcttctgtcatttttttctgcccagtaattctgacacaaactaatcaatatcagtacca--------

upper sequence: AT3G27300.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 10
GTTCTTTGCCTTGTCGCCATGGAGAAACCAATCTCTCTTAAACCCGAGCACATCCGGGATGAGAAAGTGAAGgtgattacagttttcttgatcacatctttagtttcaaacttttgtagaatcaagtgatatcttcatttgcatt-ttcagcc-aattaatattaataacaactgactgatttcttaaatgaacttcag
||||||||| | || || ||||| |||||| | ||||| |  || |||||||| |||||||||||||||||||||                   | |||||   |||||  ||   | |||| |  |  | ||||| ||    || ||| ||| | ||  |  | | |  |||| |   || ||   |           
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtg-----------------tgcctctttccattcaattttcattggaattat-tactctcttctttcattttattctgcctacttttttctgacacaaactaatcaatatcagtacc---------

upper sequence: AT3G27300.2 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 10
GTTCTTTGCCTTGTCGCCATGGAGAAACCAATCTCTCTTAAACCCGAGCACATCCGGGATGAGAAAGTGAAGgtgattacagttttcttgatcacatctttagtttcaaacttttgtagaatcaagtgatatcttcatttgcattttcagccaattaatattaataacaactgactgatttcttaaatgaacttcag
|| |||||||| || ||||||||||| ||  ||||||| ||||| ||||||||||| ||||||||||||||||||  |||       ||||| || ||| |    | |||||  |        | |  |    || ||||  ||| |   | ||  ||| ||  | ||| ||  || ||     |||| ||      
GTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCACATCCGAGATGAGAAAGTGAAGgtgcatac------tttgat-ac-tctctcacataaaactcat--------aggcaactgttttattt-tattatttactaaa-aattttgttgacatctt-ctaataatcaaaataaa------