Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCATTTTGCGTGCGGTGTCTCTTCTTGCACCTGTAATGGGCTCAGAGATTACATGCTCTAAGCTCTTACCTGTAGTAATGACTGCATCTAAAGACAGgcaagttctcactgtaaaatagttaatactcaaatcattgtacttcaaacatattaagtaaataaacaactctttcactactacag

Basic information

species Arabidopsis thaliana
transcript AT3G25800.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124975399|gb|EL048900.1|EL048900
EST:     TAATGACTGCATCTAAAGACAG                         AGTTCCAAACATCAAATTCAACGTCGCTAAAGTACTTCAATCCCTCATT
genomic: TAATGACTGCATCTAAAGACAGgcaagttctc ... actactacagAGTTCCAAACATCAAATTCAACGTCGCTAAAGTACTTCAATCCCTCATT
EST: gi|301501085|gb|HO206625.1|HO206625
EST:     ATTACATGCTCTAAGCTCTTACCTGTAGTAATGACTGCATCTAAAGACAG                         AGTTCCAAACATCAAATTCAACGTCGCTAAAGTACTTCAATCCCTCATTCC
genomic: ATTACATGCTCTAAGCTCTTACCTGTAGTAATGACTGCATCTAAAGACAGgcaagttctc ... actactacagAGTTCCAAACATCAAATTCAACGTCGCTAAAGTACTTCAATCCCTCATTCC
EST: gi|164022780|gb|ES146414.1|ES146414
EST:     TTACATTGCTCTAAGCTCTTACCTGTAGTAATGACTGCATCTAAAGACAG                         AGTTCCAAACATCAAATTCAACG
genomic: TTACA-TGCTCTAAGCTCTTACCTGTAGTAATGACTGCATCTAAAGACAGgcaagttctc ... actactacagAGTTCCAAACATCAAATTCAACG