1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CACGTCTAATGTTTACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGgtatagtctcctgcaaccaaattttgatttcgttacttatatttcaattttgttcttaacgtccatatgtaatgccaatatttttttctgtattcag
species | Arabidopsis thaliana |
transcript | AT3G25585.4 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATG CTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTGEST: gi|125319744|gb|EL333829.1|EL333829
genomic: ACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGgtatagtctc ... ctgtattcagCTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTG
EST: TTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATG CTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTGEST: gi|301502798|gb|HO208338.1|HO208338
genomic: TTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGgtatagtctc ... ctgtattcagCTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTG
EST: ACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATG CTATATCCCTTAGTCACGTTAATTGCAGGA
genomic: ACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGgtatagtctc ... ctgtattcagCTATATCCCTTAGTCACGTTAATTGCAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGTCTAATGTTTACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGgtatagtctcctgcaaccaaattttgatttcgttacttatatttcaattttgttcttaacgtccatatgtaatgccaatatttttttctgtattcag
- - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - TGGAAG