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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTCTTGCCAGTGCTATCATAGGCATGGCGCAGGATTACGTGGGCAGCAACAATATCAACTTACTTCTACCAAATGGTCAATTTGGTACACGAACTTCGgtaagtatagctaatagaccaactgttgtcatttatctatgcttgtactcatcatagtgtacacaattgtag

Basic information

species Arabidopsis thaliana
transcript AT3G23890.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23890.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 10
GAGTCTTGCCAGTGCTATCATAGGCATGGCGCAGGATTACGTGGGCAGCAACAATATCAACTTACTTCTACCAAATGGTCAATTTGGTACACGAACTTCGgtaagtatagctaat---agaccaactgttgtcatttatc--tatgcttgtactcatcatagtgtacacaattgtag-----------
||||||||||||  | || || |||||||| ||||| |  |||||||||||||| || ||| | ||||||||||||||||||||||| || ||   |  ||| | |  | | | |       |  ||     |||  |||  | |   |||  |  | |   |||  |   || ||            
GAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTTGTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTCATCAGgtgactcaaacaagttctgcttcttctacccccatgcatcattttaactgttattcttaccatgt-tatgtttttaactttgttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474494|gb|EG517086.1|EG517086
EST:     ACAATATCAACTTACTTCTACCAAATGGTCAATTTGGTACACGAACTTCG                         GGTGGAAAAGATTCAGCTAGTGCAAGATACATTTTCACTAAGCTCTCTCCA
genomic: ACAATATCAACTTACTTCTACCAAATGGTCAATTTGGTACACGAACTTCGgtaagtatag ... acaattgtagGGTGGAAAAGATTCAGCTAGTGCAAGATACATTTTCACTAAGCTCTCTCCA