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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaag

Basic information

species Arabidopsis thaliana
transcript AT3G15980.5
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaag
| ||||||| |||||||||||||| || ||||||||||||||| | || ||||||||||| ||||| |  || ||||| | |||||||||||   | ||||| |   || |  |    |  ||  |||  ||  |      |  ||   | |  |  ||  ||   |   |||    ||  |||| ||
AGTTCCTGTTGCTAGCATGGACAGCAGTGGAAAAATCATATGGTCAAAACATAATGAAATCCAAACTGTTAATATCAAGACTATTGGTGCAGACAATGAGgttt---tcttgttcaccatgctaatatgttgaaaacttgtatactttcttatacgtcttgtttactaacctgttccat--ttttcag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 1
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaag
| ||||||| |||||||||||||| || ||||||||||||||| | || ||||||||||| ||||| |  || ||||| | |||||||||||   | ||||| |  ||  | |   |  ||  | | ||      | | || || | | | |  |  |   ||   |   |||    ||  |||| ||
AGTTCCTGTTGCTAGCATGGACAGCAGTGGAAAAATCATATGGTCAAAACATAATGAAATCCAAACTGTTAATATCAAGACTATTGGTGCAGACAATGAGgtttt-ctgttcaccatg-ctaatatgttgaaaacttgtaatactttctt-atacgtcatgtttcctaacctgttctat--ttttcag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctg---cgtgactcagctatttatttgtactgcctgatgattttaag
| ||||||| ||||||||||| || || |||||||| |||||||| |||||||||||||| ||||| |  |||||||| ||| |||||||||   | |||||     |  |        || || |  | |    |  | || | ||      |  |   || |     |  | ||  | ||  |||| ||
AGTTCCTGTTGCTAGCATGGATAGCAGTGGAAAAATTATATGGGCAAAGCATAATGAAATCCAAACTGTTAACATCAAGAGTGTTGGTGCAGACAATGAGgttgcctttgttcaccatgctattatgatgtaaacttagtaagcttgttataaggtttctctgtggtccttaattgtttcat--tttttag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctg---cgtgactcagctatttatttgtactgcctgatgattttaag
| ||||||| ||||||||||| || || |||||||| |||||||| |||||||||||||| ||||| |  || ||||| ||| |||||||||   | |||||     |  |        ||  ||   | |    |  | || | ||         |   || |     |  ||||  | ||  |||| ||
AGTTCCTGTTGCTAGCATGGATAGCAGTGGAAAAATTATATGGGCAAAGCATAATGAAATCCAAACTGTTAATATCAAGAGTGTTGGTGCAGACAATGAGgttgcctttgttcaccatgctgctgcgatgtaaacttagtaagcttgttataaagtttctctgtggtccttaactgtttcat--tttttag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaag---------------------
| ||||||| |||||||||||||  ||||| ||||| || ||| ||||||||||||||||||| || |  || || |||||| | || |||| |   ||||| | |   ||  || |  || || | || |||  ||  | ||  |||| |    |  | || | || |  |   |  |  |   | |                     
AGTTCCTGTGGCTAGCATGGACAACAGCGGGAAAATTATTTGGTCTAAGCATAATGAAATTCAGACTGTCAATATAAAAAGTGTAGGAGCAGATGTAGAGgtatgggctctg-ttattcctttttttttttgggctgt-ataatttgcgagcaagaagtgttaagttctctttatttttagtgacatgtgcaagtactatgcttcttag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgta-ttctggcatgggaaaacctgcgtgactcag--ctatttatttgtactg---cctgatgattttaag--------
| | ||||| |||||||||||||  || || ||||| || ||| ||||||||||||||||||| || |  || || |||||| | || |||| |   ||||| | |   ||| |  | | | || |   | |   ||  |  | |  |      | ||  || ||||||| || ||     ||    |  || |        
AGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGTCTAAGCATAATGAAATTCAGACTGTCAATATAAAAAGTGTAGGAGCAGATGTAGAGgtatgggctctattattcatttttttggctgtataatttgcgagcaagaagtgttaagttctctttatttttagtgagatgtgtaagtactatgcttcttag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtat---tctggcatgggaaaacctgcgtgactcagc--tatttatttgtact-gcctgatgattttaag
|   ||||| || |||||||| |  || || ||||| || |||||||||||||||||||||||||| |  || || | |||| | || |||| |   ||||| | |   |   ||     | || |||   |||   |||  |  |   | |  |    ||  || | |    | |  |    ||| |||| ||
AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGAAGTGTAGGAGCAGATGTGGAGgtatgggctcatttttacctttttttatccgtctaatatgtaagcaaaagtggaaacttgctttagtgacacatgcaagtactatgttttttag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctag-ctcctaattgtaactcttgtat-tctggcatgggaaaacctgcgtgactcagc--tatttatttgtact-gcctgatgattttaag
|   ||||| || |||||||| |  || || ||||| || |||||||||||||||||||||||||| |  || || |  ||| | || |||| |   ||||| | | ||| |  ||     | ||||   | |   |||  |  |   | |  |    ||  || | |    | |  |  | ||| |||| ||
AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGgtatgggctcatttttaccctttttgtccgtgtaatatgtaagcaaaagtggaaacttgctttagtgacacatgcaagtattatgttttttag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaat---tgtaactcttgtattctggcatggga--------aaacctgcgtgactcagctattta-tttgtactgcctgatgattttaag------------------
    || || ||||| ||||| | ||| ||||| |||||||||||||| || |||||||||||||| |  || || | |||| |||| |||| ||| ||||| ||  |||  |    || |  | |  | || | |  || ||        ||||     |  |||  || |||  |||||    | |  | | |||                     
TGAACCAGTAGCTAGTATGGATAATAGTGGAAAGATCATATGGGCTAAACACAATGAAATTCAAACAGTTAATATTAGAAGTGTTGGGGCAGATTATGAGgtttatttccctacatgtgcagatttcatctttttggctgagatggatgagaaactattttttctcttctttttgctttgtctaacatagtcaatttggtaacatctattattctcag

upper sequence: AT3G15980.5 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgt-attctgg---catggga---aaacctgcgtga-------ctcagctatttatttgtactgcctgatgattt-taag
| | ||||| || || |||||||  || |||||||| |||||||||||||||||||||||||| || |  || || || ||| | || |||| ||  ||||| |       ||||     | || | ||| |||   ||||  |   || | |  ||||        | || |    |||| |        |||  || | ||
AGTGCCTGTGGCAAGTATGGACAACAGTGGAAAAATAATATGGGCTAAGCATAATGAAATTCAGACTGTGAATATAAAGAGTGTGGGAGCAGATTTTGAGgtttgaacttaaattcagcttattctcattttggttacatgacattgaagcttaagtgagaaatccttaaggttcacatttctttcttgccatgccttctcag