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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag

Basic information

species Arabidopsis thaliana
transcript AT3G15980.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag
| ||||||| |||||||||||||| || ||||||||||||||| | || ||||||||||| ||||| |  || ||||| | |||||||||||   | ||||| |   || |  |    |  ||  |||  ||       ||||| ||  |   |       ||||  ||  ||  |  | |  |     || ||| | ||        
AGTTCCTGTTGCTAGCATGGACAGCAGTGGAAAAATCATATGGTCAAAACATAATGAAATCCAAACTGTTAATATCAAGACTATTGGTGCAGACAATGAGgttt---tcttgttcaccatgctaatatgttg-------aaaacttgtatacttt-----cttatacgtcttgtttactaacctg----ttccatttttcag------

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 1
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag
| ||||||| |||||||||||||| || ||||||||||||||| | || ||||||||||| ||||| |  || ||||| | |||||||||||   | ||||| |     ||  |    |  ||  |||  ||       ||||| ||    |||    |||   |   |  | ||| |    ||  |  |||||              
AGTTCCTGTTGCTAGCATGGACAGCAGTGGAAAAATCATATGGTCAAAACATAATGAAATCCAAACTGTTAATATCAAGACTATTGGTGCAGACAATGAGgttt----tctgttcaccatgctaatatgttg-------aaaacttgtaatactttcttatacgtc-atgtttcctaacctgttctatttttcag-------------

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag
| ||||||| ||||||||||| || || |||||||| |||||||| |||||||||||||| ||||| |  |||||||| ||| |||||||||   | |||||   ||   |  |    |  ||   ||| ||   |      |      |   |      ||| | |||  | | | ||  ||| |   |||                
AGTTCCTGTTGCTAGCATGGATAGCAGTGGAAAAATTATATGGGCAAAGCATAATGAAATCCAAACTGTTAACATCAAGAGTGTTGGTGCAGACAATGAGgtt--gcctttgttcaccatgct---attatgatgtaaacttagtaagcttgttataaggtttctctgtggtccttaattgtttcattttttag--------------

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag
| ||||||| ||||||||||| || || |||||||| |||||||| |||||||||||||| ||||| |  || ||||| ||| |||||||||   | |||||     |  |        ||  ||   | |    |  | || | ||  | |   ||   ||| | |||  | | | |   ||| |   |||                
AGTTCCTGTTGCTAGCATGGATAGCAGTGGAAAAATTATATGGGCAAAGCATAATGAAATCCAAACTGTTAATATCAAGAGTGTTGGTGCAGACAATGAGgttgcctttgttcaccatgctgctgcgatgtaaacttagtaagcttg--ttataaag---tttctctgtggtccttaactgtttcattttttag--------------

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcat-ctctctaccttag
| ||||||| |||||||||||||  ||||| ||||| || ||| ||||||||||||||||||| || |  || || |||||| | || |||| |   ||||| | |   ||  || |  || || | || |||  ||  | ||  |||| |    |  | || | || |  |   |  |  |   | |      | || |    |||||
AGTTCCTGTGGCTAGCATGGACAACAGCGGGAAAATTATTTGGTCTAAGCATAATGAAATTCAGACTGTCAATATAAAAAGTGTAGGAGCAGATGTAGAGgtatgggctctg-ttattcctttttttttttgggctgt-ataatttgcgagcaagaagtgttaagttctctttatttttagtgacatgtgcaagtactatgcttcttag

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgta-ttctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag
| | ||||| |||||||||||||  || || ||||| || ||| ||||||||||||||||||| || |  || || |||||| | || |||| |   ||||| | |   ||| |  | | | || |   | |   ||  |  | |  |      | || | | | | | |   |   ||||  | ||||   |   ||   ||      
AGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGTCTAAGCATAATGAAATTCAGACTGTCAATATAAAAAGTGTAGGAGCAGATGTAGAGgtatgggctctattattcatttttttggctgtataatttgcgagcaagaagtgttaagttctctttatttttagtgagatg--tgtaagtactatgcttcttag-----

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattctggc--atgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag
|   ||||| || |||||||| |  || || ||||| || |||||||||||||||||||||||||| |  || || | |||| | || |||| |   ||||| | |   | | || || || || |  || | |  ||  | || |    |||    |    |   || ||    | ||    |  || | |||                
AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGAAGTGTAGGAGCAGATGTGGAGgtatgggctc-atttttacctttttttatccgtctaatatgtaagcaaaagtgg---aaacttgctttagtgacacatgcaagtactatgttttttag------------

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgtattc-tggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag
|   ||||| || |||||||| |  || || ||||| || |||||||||||||||||||||||||| |  || || |  ||| | || |||| |   ||||| | |   | | || || |  || | | | ||  ||  | || |    |||    |    |   || ||    | ||    | ||| | |||                
AGAACCTGTAGCCAGCATGGATAACAGTGGGAAAATAATTTGGGCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGgtatgggctc-atttttaccctttttgtccgtgtaatatgtaagcaaaagtgg---aaacttgctttagtgacacatgcaagtattatgttttttag------------

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaat---tgtaactcttgtattctggcatggga--------aaacctgcgtgactcagctattta-tttgtactgcctgatgattttaagctttcatctctctaccttag
    || || ||||| ||||| | ||| ||||| |||||||||||||| || |||||||||||||| |  || || | |||| |||| |||| ||| ||||| ||  |||  |    || |  | |  | || | |  || ||        ||||     |  |||  || |||  |||||    | |  | | |||  | |  ||||| |    || ||
TGAACCAGTAGCTAGTATGGATAATAGTGGAAAGATCATATGGGCTAAACACAATGAAATTCAAACAGTTAATATTAGAAGTGTTGGGGCAGATTATGAGgtttatttccctacatgtgcagatttcatctttttggctgagatggatgagaaactattttttctcttctttttgctttgtctaacatagtcaattt--ggtaacatctattattctcag

upper sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 10
AATTCCTGTCGCTAGCATGGACAGTAGCGGAAAAATCATATGGGCTAAGCATAATGAAATTCAAACCGCAAACATCAAAAGTATTGGTGCAGGTTACGAGgtctagctcctaattgtaactcttgt-attctggcatgggaaaacctgcgtgactcagctatttatttgtactgcctgatgattttaagctttcatctctctaccttag
| | ||||| || || |||||||  || |||||||| |||||||||||||||||||||||||| || |  || || || ||| | || |||| ||  ||||| |       ||||     | || | ||| |||  |   |  || |  |   || |  |    | |  |   |  | |   || |    | |   |   |   || ||
AGTGCCTGTGGCAAGTATGGACAACAGTGGAAAAATAATATGGGCTAAGCATAATGAAATTCAGACTGTGAATATAAAGAGTGTGGGAGCAGATTTTGAGgtttgaacttaaattcagcttattctcattttgg--ttacatgacat-tgaagcttaagtgagaaatccttaaggttcacatttct---ttcttgccatgccttctcag