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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAATGGGGAAAATAGGACTCTCCAGGCCATCGAGCAGGAAAGTGGCTTTGGCAATCAACTGCGTCTTTGGAAATGGGCTTCCTACTGTGCATCAGAGgtaatacagaatctggatagttttgttgctttttgaatttgaagtttttttccgtctcagagacgtaatttacttatcttttttcatttgtttctgaag

Basic information

species Arabidopsis thaliana
transcript AT3G14120.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14120.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os11g42420.1 (Oryza sativa), 5'ss of exon 9
AAAGAATGGGGAAAATAGGACTCTCCAGGCCATCGAGCAGGAAAGTGGCTTTGGCAATCAACTGCGTCTTTGGAAATGGGCTTCCTACTGTGCATCAGAGgtaatacagaatctggata---------gttttgttgctttttgaatttg------aagtttttttccgtctcagagacgtaatttacttatcttttttcatt------tgtttctgaag-------------------------------
 ||||||||  |   ||| || || || || || ||   |||||||||  ||||    ||  |  ||||||||||||||||||| || ||||| |||||||| | |||   ||| | |          | | |||||   | | ||||         | |||||||   |     | |   | |  |||| | | |   ||        || ||   ||                                
GAAGAATGGAAAGTCTAGAACACTGCAAGCGATTGAATTGGAAAGTGGTGTTGGACGGCAGTTATGTCTTTGGAAATGGGCTTCATATTGTGCTTCAGAGgttaaacatgctcttgtttttgaactatgctctgttgtgctctcaattaatggtctgaatttttttattttcttcaaattcattacacttttgtgtagccagcacataatgctttgcaaacctaaatctgaaattgataatatttatgtag

upper sequence: AT3G14120.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G04680.1 (Glycine max), 5'ss of exon 6
AAAGAATGGGGAAAATAGGACTCTCCAGGCCATCGAGCAGGAAAGTGGCTTTGGCAATCAACTGCGTCTTTGGAAATGGGCTTCCTACTGTGCATCAGAGgtaatacagaatctggatagttttgttgctttttgaatttgaagtttttttccgtctcagagacgtaatttacttat-----cttttttcatttgtttctgaag
 ||||||||  ||||||| ||| | || ||  | ||    ||||||||| ||||  ||||   || |||||||||||||||||| |  |||||||||||||||     | || |  ||| |  |    |  |||    ||   |||||||   |   || |    |||| |   |||     | ||  ||    | || | |  
GAAGAATGGTAAAAATAGAACTTTGCAAGCTGTTGAATTTGAAAGTGGCATTGGTCATCAGTGGCATCTTTGGAAATGGGCTTCATTTTGTGCATCAGAGgtagggttgtatattaatactaattgaacgatttt--cttcgtgttttttattgatgcatatgt-taatctgtgtattgacaccttcctctccagcttttcac-

upper sequence: AT3G14120.3 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv09s0002g00840.t01 (Vitis vinifera), 5'ss of exon 5
AAAGAATGGGGAAAATAGGACTCTCCAGGCCATCGAGCAGGAAAGTGGCTTTGGCAATCAACTGCGTCTTTGGAAATGGGCTTCCTACTGTGCATCAGAGgta-atacagaat-ctggatagttttgttgctttttgaatttgaagtttttttccgtctcagagacgtaatttacttatcttttttcatttgtttctgaag---
 ||||||||  | ||||| ||||| || ||||| || |  ||||||||| |||| || ||   ||| |||||||||||||||||||| ||||||||||||||| || || |    || |||  | | |  | | || |  || |    | | ||   || | |  | |  ||   |      | |  ||      |||||    
GAAGAATGGAAAGAATAGAACTCTGCAAGCCATTGAACTTGAAAGTGGCATTGGTAACCAGTGGCGCCTTTGGAAATGGGCTTCCTATTGTGCATCAGAGgtagattcaaaggattgaatacatctctaccatatttacattaa----tctgtctagctgaaatgcattcttgtatcgagactatgaatgaaagcctgaaaaca