Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGAATGTGTTTGGGCCTCTGCCCTCAGCTGCTTGCTCTATTTTATCTGTGATAGAGGCAAAATACGGAGAAACCAGCTAAATGGTCTTGACATAAGGgtacgttagtattacgaggctgaatataatctttgccctctgctatgtggattattccttctttaattctcctcctattttcatttggatctgtcctttc...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G12590.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G12590.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA18G52540.1 (Glycine max), 5'ss of exon 7
GGAAGAATGTGTTTGGGCCTCTGCCCTCAGCTGCTTGCTCTATTTTATCTGTGATAGAGGCAAAATACGGAGAAACCAGCTAAATGGTCTTGACATAAGGgtacgttagtattacgaggctgaatataatctttgccctctgctatgtggattattccttctttaattctcctcctatttt-catttggatctgtcctttc
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GGATGAATCTGTTTGGGCATCTGCTCTCAGCTGTTTGCTGTATTTTGTCTGTGATAGAGGGAAGATCAAGAGAAACCGTTTGCGTGGTCTTGACATAAGGgtgagaaataatatccccctttcctatctgcttttaccagtatttcatggaa-atttgattttttgttcacattctgctgggtaaatgttttgcttctttt
upper sequence: AT3G12590.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA02G10370.1 (Glycine max), 5'ss of exon 10
GGAAGAATGTGTTTGGGCCTCTGCCCTCAGCTGCTTGCTCTATTTTATCTGTGATAGAGGCAAAATACGGAGAAACCAGCTAAATGGTCTTGACATAAGGgtacgt--tagtattacgaggctgaatataatctttgccctctgctatgtggattattccttctttaattctcctcctattttcatttggatctgtcctttc
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GGATGAATCTGTTTGGGCATCTGCTCTCAGCTGTTTGCTGTATTTCGTCTGTGATAGAGGAAAGATCAAGAGAAACCGTTTGCATGGTCTTGACATAAGGgtgagaaataatatccccctctcctatttgattctaccagtatttcattgaaatt--ccattttttgtttcactccacattctgctgggtaaatgttttgct
upper sequence: AT3G12590.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv13s0019g00680.t01 (Vitis vinifera), 5'ss of exon 10
GGAAGAATGTGTTTGGGCCTCTGCCCTCAGCTGCTTGCTCTATTTTATCTGTGATAGAGGCAAAATACGGAGAAACCAGCTAAATGGTCTTGACATAAGGgtacgttagtattacgaggctgaatataatctttgccctctgctatgtggattattccttctttaattctcctcctattttcatttggatctgtcctttc-----
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GGAGGAGTCTGTTTGGGCATCTGCTCTGAGCTGTCTGCTTTATTTTGTTTGTGATAGAGGCAAAATCTGCAGGAACCGATTAAAATGTCTTGACATAAGGgtgagtgcttccttccttccttc-cggacattctatgtatcattttgtcatggatacagttcttcatactc--actgcttgaat--gggcgagtcctctaatagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19876193|gb|AU237024.1|AU237024EST: GTGATAGAGGCAAAATACGGAGAAACCAGCTAAATGGTCTTGACATAAGG GTTATAAAAGCTCTTCTGGGAACTAGCAAAAGGAATTCTTGGTCAGAAGTT
genomic: GTGATAGAGGCAAAATACGGAGAAACCAGCTAAATGGTCTTGACATAAGGgtacgttagt ... cttgaatcagGTTATAAAAGCTCTTCTGGGAACTAGCAAAAGGAATTCTTGGTCAGAAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGAATGTGTTTGGGCCTCTGCCCTCAGCTGCTTGCTCTATTTTATCTGTGATAGAGGCAAAATACGGAGAAACCAGCTAAATGGTCTTGACATAAGGgtacgttagtattacgaggctgaatataatctttgccctctgctatgtggattattccttctttaattctcctcctattttcatttggatctgtcctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcct