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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATCAAAGCTTGTAGTAAAAGGGAATATTATCTGGTCTGATAACTCCAACGACCTCAACGTTCAAGTCTCAAGTCCTTCCCATTTCAAGATTTGCACAgtaatacccaatccaatggctcccttgttcaggttttttcctctgcaattgaaatgtgattgttgattcttgtttttgttttggcag

Basic information

species Arabidopsis thaliana
transcript AT3G10540.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10540.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 11
CCCATCAAAGCTTGTAGTAAAAGGGAATATTATCTGGTCTGATAACTCCAACGACCTCAACGTTCAAGTCTCAAGTCCTTCCCATTTCAAGATTTGCACAgtaa---------tacccaatccaatg-----------gctcccttgttcaggttttttcctctgcaattgaaat-gtgattgttgatt-cttgtttttgttttggcag
|||  | |||||  | ||||| || ||||| ||||||||||| ||| | || ||||||| | | |||||| |||||||||| ||||||||||||||||| |||          | |||||||   ||             | ||||| |||  ||||| ||||| | |  || || |  |||| |||   | ||    |          
CCCTGCGAAGCTGATGGTAAAGGGAAATATAATCTGGTCTGACAACCCTAATGACCTCAGCATCCAAGTCACAAGTCCTTCACATTTCAAGATTTGCACGgtatgtcccttctttcccaatcttctgttttggggcacatttccttggtcatttttttacctcttctaaagacattgcaattgctgaccacatggaccta---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19741141|gb|AU226494.1|AU226494
EST:     ACGACCTCAACGTTCAAGTCTCAAGTCCTTCCCATTTCAAGATTTGCACA                         CCGAAGAAATTTTTATCGTTTGAAGATGCGAAGCAAAGAGCTTTGCAGTGG
genomic: ACGACCTCAACGTTCAAGTCTCAAGTCCTTCCCATTTCAAGATTTGCACAgtaataccca ... gttttggcagCCGAAGAAAGTTTTATCGTTTGAAGATGCGAAGCAAAGAGCTTTGCAGTGG