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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTGAAATAACTCCTGCACTGCTTCTTAAAGATGCGGCATACGCTGCTACTGCATATGTCTACTATGAGCTCTCGAATTATCTTAATTTCAGAGATTGgtatgctcttgatcttctaatgtctgaatcttttttccatctgctctaaacatcttgacccttcattttgctagccagcagaatgtgacaaaagttttgattagtcaagtaattattgtacccttcttaatgatcggatgattggctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G08960.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA18G43420.1 (Glycine max), 5'ss of exon 9
TTACTGAAATAACTCCTGCACTGCTTCTTAAAGATGCGGCATACGCTGCTACTGCATATGTCTACTATGAGCTCTCGAATTATCTTAATTTCAGAGATTGgtatgctcttgatcttctaatgtctgaatcttttttccatctgctctaaacatcttgaccct-tcattttgctagccagcagaatgtgacaaaagttttgattagtcaagtaattattgtacccttcttaatgatcggatgattggctgcag
| || ||||| ||||||||| |||||||||||||||| || || | ||||||||| ||||| || ||||| ||||| || ||||| | ||| | ||| ||||| | ||        ||| | |       || ||  | |  |   |  | || | || | | |||||   |||   |   |||  |     || |||||    | |  |                                          
TGACGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTATCTGAGTTTTAAAGACTGgtaagttcaaag----ctactat----gctttattgacgtaagtcatccatatttcgatcttgtcattc--ctaaaaaattgaagatctttcaa-ttttgtcgtgcctgga-----------------------------------------

upper sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G18530.1 (Glycine max), 5'ss of exon 9
TTACTGAAATAACTCCTGCACTGCTTCTTAAAGATGCGGCATACGCTGCTACTGCATATGTCTACTATGAGCTCTCGAATTATCTTAATTTCAGAGATTGgtatgctcttgatcttctaatgtctgaatcttttttccatctgctctaaacatcttgacccttcattttgctagccagcagaatgtgacaaaagttttgattagtcaagtaattattgtacccttcttaatgatcggatgattggctgcag
|  | ||||| ||||||||| |||||||||||||||| || || | ||||||||| ||||| || ||||| ||||| || ||  | | ||| | ||| ||||| | || |      ||| | |       || ||  | |  | | |  | || | || |       |||| |  |   | ||| |||  |  ||||   || ||   ||    |                                    
TGGCGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATGTTTATTATGAACTCTCAAACTACTTGAGTTTTAAAGACTGgtaagttcatag----ctactat----gctttattgacgtaagttatccatatttcgatc-------ttgccattcctaaaaat-tgaagatcgtttaattttgttgtgtctggac-----------------------------------

upper sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA16G19490.1 (Glycine max), 5'ss of exon 10
-----------------------------------------TTACTGAAATAACTCCTGCACTGCTTCTTAAAGATGCGGCATACGCTGCTACTGCATATGTCTACTATGAGCTCTCGAATTATCTTAATTTCAGAGATTGgtatgctcttgatcttctaatgtctgaatcttttttccatctgctctaaacatcttgacccttcattttgctagccagcagaatgtgacaaaagttttgattagtcaagtaattattgtacccttcttaatgatcggatgattggctgcag
                                         |  | ||||| ||||||||| |||||||||||||||| || || | ||||||||| ||||| || || || ||||| || ||  | | ||| | ||| ||||| | || |      ||| | |       || ||  | |  | | |  | || | || | | |  |                                                                                    
CTTTCTTCTTCAAGAGTCTATGAATAATTGTCCAACTTCAGTGGCGGAAATTACTCCTGCATTGCTTCTTAAAGATGCTGCTTATGGTGCTACTGCTTATgtttattaggaactctcaaactacttgagttttaaagactggtaagttcatag----ctactat----gctttattgacgtaagttatccatatttcgatcttgccat------------------------------------------------------------------------------------