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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGGGTACACACATCTGTTGCACCAGTGGTTACAGATCTTGGGGAGATGTATAGACAAGCAGACACTGGTTCCATTGTGTCTTTATATGCTAGATTAGgtaagctatattcaaatttttttcatatgctacttttgatactatttaatgacaatttaaattctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G07100.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07100.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os04g04020.1 (Oryza sativa), 5'ss of exon 10
ATAAGGGTACACACATCTGTTGCACCAGTGGTTACAGATCTTGGGGAGATGTATAGACAAGCAGACACTGGTTCCATTGTGTCTTTATATGCTAGATTAGgtaag--ctatattcaaatt-------tttttcatatgctacttttgatactatttaa----tgacaatttaaattctgcag---------
|| ||||| || ||| | | |||||| ||||| ||||||||||| || |||||| | |||||||| |||||| |||||||||| || |    |||| | ||| ||  ||| ||| |   |       ||||  | |||| | | |  ||  ||||| |    | | | |||  | |    |          
ATCAGGGTGCATACAGCAGCTGCACCTGTGGTCACAGATCTTGGTGAAATGTATCGTCAAGCAGATACTGGTGCCATTGTGTCATTGTTGAGTAGAATCGgttagtactagatttatgctcctgccattttgtaaatgccagtatatatggtatttgagtgttcatagttttgacttattatatgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442285|gb|EG484877.1|EG484877
EST:     GTATAGACAAGCAGACACTGGTTCCATTGTGTCTTTATATGTTAGATTAG                         CAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
genomic: GTATAGACAAGCAGACACTGGTTCCATTGTGTCTTTATATGCTAGATTAGgtaagctata ... aattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
EST: gi|164226362|gb|ES034828.1|ES034828
EST:     GGTTCCATTGTGTCTTTATATGCTAGATTAG                         CAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
genomic: GGTTCCATTGTGTCTTTATATGCTAGATTAGgtaagctata ... aattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
EST: gi|125148798|gb|EL182281.1|EL182281
EST:     TATGCTAGATTAG                         CAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
genomic: TATGCTAGATTAGgtaagctata ... aattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC