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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTGCACACGTTTATTCCGAAGCCCGGAGGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAGgtgagaccgattttcgacatggaacttctgattaaatctttacaggaaccttgatacttttgaaatataaactgtgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G06580.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116456853|gb|EG499445.1|EG499445
EST:     GAAGCCCGGAGGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAG                         TGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTA
genomic: GAAGCCCGGAGGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAGgtgagaccga ... ctgtgtgcagTGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTA
EST: gi|116456852|gb|EG499444.1|EG499444
EST:     GAAGCCCGGAGGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAG                         TGACGAAGAGAAGTTAAAGAAACTTGGTGATTTCATGAATGAAAGCCATTA
genomic: GAAGCCCGGAGGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAGgtgagaccga ... ctgtgtgcagTGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTA
EST: gi|164140895|gb|ES028829.1|ES028829
EST:     CCGGAGGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAG                         TGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTA
genomic: CCGGAGGGTTCATGGTTTCAAGGACACAGTTAATTCAAACTTAAGgtgagaccga ... ctgtgtgcagTGACGAAGAGAAGTTAAAGAAACTTGGTGATCTCATGAATGAAAGCCATTA