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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAAGTTGGATGGATAAACTGGAGGAAGCTGAGATGAAATTCAGGGTGGCTATCAAAACATCTGTGGCACTGATAGCACTAACGgtattacaagtcatcatttgactttctttcaggtgaaagaagcctcttgcatattgttcttccagctaatctatctttgttattatgaaacttttag

Basic information

species Arabidopsis thaliana
transcript AT3G06550.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125314532|gb|EL328617.1|EL328617
EST:     TGAAATTCAGGGTGGCTATCAAAACATCTGTGGCACTGATAGCACTAACG                         GTGGGATTATTTTTGGTACGAGTATATATACAAGATGGACAAG
genomic: TGAAATTCAGGGTGGCTATCAAAACATCTGTGGCACTGATAGCACTAACGgtattacaag ... aaacttttagGTGGGAT-ATTTTTGGTACGAGTATATATACAAGATGGACAAG
EST: gi|124720155|gb|EH811557.1|EH811557
EST:     TGAAATTCAGGGTGGCTATCAAAACATCTGTGGCACTGATAGCACTAACG                         GTGGGATATTTTTGGTACGAGTATATATACAAGATGGACAAG
genomic: TGAAATTCAGGGTGGCTATCAAAACATCTGTGGCACTGATAGCACTAACGgtattacaag ... aaacttttagGTGGGATATTTTTGGTACGAGTATATATACAAGATGGACAAG
EST: gi|164050720|gb|ES005737.1|ES005737
EST:     GGCTATCAAAACATCTGTGGCACTGATAGCACTAACG                         GTGGGATA-TTTTGGTACGAGTATATATACAAGATGGACAAGTTAACTTAC
genomic: GGCTATCAAAACATCTGTGGCACTGATAGCACTAACGgtattacaag ... aaacttttagGTGGGATATTTTTGGTACGAGTATATATACAAGATGGACAAGTTAACTTAC