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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAAAgtaagtttctttttcttctcccaataattagaaaataactctactaatttgttgtgcttgattgactaaactgtatacgttttcttggcgtag

Basic information

species Arabidopsis thaliana
transcript AT3G06370.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 8
TATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAAAgtaagtttcttttt--cttctcccaataattagaaaataactctactaatttgttgtgcttgattgactaaactgtatacgttttcttggcgtag------------------------------------
|  |  | |||||   |||  | || ||||||||||| || ||||| ||||| |||||||| ||||| ||||| ||||| |  |||| |||||| || |||||||| ||||| |   || |  ||  ||    |  ||  |  |   | ||| ||   ||||||    | || | | ||  |  |      ||                                      
TGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCAAgtaagtatctttatggtttgtttcagcaaacttattattccattttcattttttta-acttgatgatttcaaatatgtatttcctgaaattgtgtatcacactgatgcttctctaattgtatactctatag

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA17G02560.1 (Glycine max), 5'ss of exon 8
TATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAAAgtaagtttctttttcttctcccaataattagaaaataactctactaatttgttgtgcttgat-tgactaaactgtatacgttttcttggcgtag
||||    || ||  | ||  ||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |  || |  || || || ||||| ||    || | |   | || | || ||| |     | ||| |  ||| |     ||||   ||| |||||  ||  ||| | ||  | ||
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattct-tcaacacattcatgagaca-----tgtacaagattgctactaatgatactacttaactgatta-atttccctgctgcag

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G38160.1 (Glycine max), 5'ss of exon 9
TATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAAAgtaagtttctttttcttctcccaataattagaaaataactctactaatttgttgtgcttgat-tgactaaactg-tatacgttttcttggcgtag
||||    || ||  | ||  ||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |  || |  || || || ||||| ||    || | |   | || | |||||  |     | ||| |  | | |     ||||   ||| ||||| | |   ||| | || || ||
TATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCAAgtacgtgaaattct-tcaacacattcattaggca-----tgtacaagatagctactaatgatactacttaactgattttaatttccctgccgcag

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 5'ss of exon 10
TATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAAAgtaagtttctttttcttctcccaataattagaaaataactctact--aatttgttgtgcttga---ttgactaaactgtatacgttttcttggcgtag--------------------
| ||| | || ||  | ||  | ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || || |  || |  || ||||| ||||| |||  || | |        |    | |||| | | ||  ||  | |   || |||   |   |||| ||||||||     |  |  ||    ||                    
TGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACTACCAAgtatgttaattatccaggaagtgaagtattgaaattcattcatcttcattccattttgccaaaatgttgattaaactgtgatgttgctgatgttacagttcttaccaaatgtttgcag