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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGAAAGACACAGGTCATATTGAAGTGTGATATGTCGGCGTGGCAGAAAGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCCTTCAAACAGgtttgtagcttaactcacgtatactctctccctaatgttgcactcatctttgaggtaagagaaaatgaatcagaaagaggagctgattttatgcaaacgtaatcaccatgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G06010.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06010.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G28120.1 (Glycine max), 5'ss of exon 11
CCTGGAAAGACACAGGTCATATTGAAGTGTGATATGTCGGCGTGGCAGAAAGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCCTTCAAACAGgtttgtagcttaactcacgtatactctctccctaatgttgcactcatctttgaggtaagagaaaatgaatcagaaagaggagctgattttatgcaaacgtaatcaccatgtgcag
||||  ||  | ||||||||| | || ||||||||||| || ||||||||||| |||||  |||||||||| ||  | ||||| |||||| |  | |  ||| ||| |  ||  ||  || | |    |   |  |    ||||  || || |   |             || |||  | | ||  ||||   ||||     ||      |    
CCTGTGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAATGgtatgt-gtctatttcttgttttccaattatttcctaacccacttctcctttaacca-------------cataaaatgcaacttttttttctcaaatactttctttgattttg-

upper sequence: AT3G06010.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv05s0020g02960.t01 (Vitis vinifera), 5'ss of exon 10
CCTGGAAAGACACAGGTCATATTGAAGTGTGATATGTCGGCGTGGCAGAAAGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCCTTCAAACAGgtttgtagctta-actcacgtatactctctccctaatgttgcactcatctttgaggtaagagaaaatgaatcagaaagaggagctgattttatgcaaacgtaatcaccatgtgcag
||||| || || |||||||||||||| ||||||||||| || ||||||||||  |||||  | ||||| |||||| |||||||||||||  |  | || ||| || | |||   | |    || || | |   | ||     |   | |  |    |   ||      ||||| |||| || || ||   |  | | || | |             
CCTGGGAAAACCCAGGTCATATTGAAATGTGATATGTCAGCCTGGCAGAAAGCATATTATCATCAAGTAACAGACTTGGGCAGGGTTGGATTGGATACTGgtatgcatcttttgcccttacatgcttttttttttataggcaaaagaacaatttattggaagc--gccaatcaaaaag-ggggcagaaccttagtacacatga-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125079268|gb|EL141335.1|EL141335
EST:     AGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCCTTCAAACAG                         GATCTGGGAAATCAAAGAGTCTGCAAAATCTAACGATGCAATTAAGAAAGT
genomic: AGTGTATTACAAACAAGTTACAGACATGGGCAGGGTTGGCCTTCAAACAGgtttgtagct ... ccatgtgcagGATCTGGGAAATCAAAGAGTCTGCAAAATCTAACGATGCAATTAAGAAAGT