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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCAACGATATATATGAACTCGAGGGAGTACCTGTGGTTACAGTACAGCTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCTAGgttggtaatctagaatcctatgttttgggatgatcgtgatggatctattctgttttggttttaagtctttgtttttgtgttttggaaaatcgtag

Basic information

species Arabidopsis thaliana
transcript AT3G04870.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G04870.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G30220.1 (Glycine max), 5'ss of exon 10
TTTTCAACGATATATATGAACTCGAGGGAGTACCTGTGGTTACAGTACAGCTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCTAGgttggtaatctagaatcctatgttt-tgggatgatcgtgatg-gatcta-ttctgttttggttttaagtctttgtttttgtgttttggaaaatcgtag-----------------------------------
|||||||  |||| |||||||| |  ||||| ||||| || ||||| || |||||||||||||||||||| || ||||| || ||  | |||   |  | | |  |  |||  | |     ||   ||     |   | | | ||| || || || ||||    | |   ||  | | |   ||    |  || ||                                     
TTTTCAATAATATCTATGAACTAGTTGGAGTTCCTGTAGTCACAGTGCAACTCAGATACAATGGTTGGGTTACAGAGTTGCAGGATCTAGAAAA-GTCAAGgtaattctctgaattttagggtccatgtagaaactataaagtgatgtacttttgctttgacagttaagattgatctatcctttgatcattattgttcaacttcttcatgcacccttactatctggatgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124977915|gb|EL051184.1|EL051184
EST:     CTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCTAG                         GCAGTTGAAACGAGCGGTTGGCTTAGATAATCTTCTCTA
genomic: CTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCTAGgttggtaatc ... aaaatcgtagGCAGTTGAAACGAGCGGTTGGCTTAGATAATCTTCTCTA
EST: gi|125220804|gb|EL234889.1|EL234889
EST:     TGAACTTGCTAG                         GCAGTTGAAACGAGCGGTTGGCTTAGATAATCTTCTCTACACTCCTGATGC
genomic: TGAACTTGCTAGgttggtaatc ... aaaatcgtagGCAGTTGAAACGAGCGGTTGGCTTAGATAATCTTCTCTACACTCCTGATGC
EST: gi|124903566|gb|EH977646.1|EH977646
EST:     CTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCTAG                         GCAGTTGAAACGAGCGGTTGGCTTAGATAATCTTCTCTACACTCCTGA
genomic: CTCAGATACAATGGTTGGGTCACGGAGTTACAAGACATTGAACTTGCTAGgttggtaatc ... aaaatcgtagGCAGTTGAAACGAGCGGTTGGCTTAGATAATCTTCTCTACACTCCTGA