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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCTTGGTCGTACAGGAAGTCGGAGGGATGATCTGGAGTCATTGGCTTATACATTAATATTTCTGATGCGGGGAAGGTTGCCATGGCAAGGATACCAGgtgagttatttatctatctactcacaatctagaaccttgtaagtttcagttgtagtcaataatacatggtttttgttcacag

Basic information

species Arabidopsis thaliana
transcript AT3G03940.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os01g56580.1 (Oryza sativa), 5'ss of exon 10
ACATCTTGGTCGTACAGGAAGTCGGAGGGATGATCTGGAGTCATTGGCTTATACATTAATATTTCTGATGCGGGGAAGGTTGCCATGGCAAGGATACCAGgtga--gttatttatct----atctactcacaatctagaacct---tgtaagtttcagttgtagtcaataatacatggtttttgttcacag-----------------------------------------------------------------------------------------------------------
 ||| | || ||||| || ||  | |||||||||||||| ||||| || |||||||||||||||||  |  | |||||||| || |||||||| ||||||||     || ||| |||    || |  | | |    |    ||   ||| |  |||| ||| |   | | |   | |||||||| |                                                                                                                
CCATTTAGGCCGTACTGGTAGCAGAAGGGATGATCTGGAATCATTAGCATATACATTAATATTTCTTCTCAGAGGAAGGTTACCTTGGCAAGGCTACCAGgtttccattctttctctggacatttggttatacctgatgtactatgtgttatgttcatttgca--tattgagtgaaggtttttggttcttccttttgtttgtttccaatagattcagtgataacgatagtttatctgtgatatgttctttcttgctcactgattttgtatataacttgatctgtcatgtttattgcag

upper sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G116086_T01 (Zea mays), 5'ss of exon 10
ACATCTTGGTCGTACAGGAAGTCGGAGGGATGATCTGGAGTCATTGGCTTATACATTAATATTTCTGATGCGGGGAAGGTTGCCATGGCAAGGATACCAGgtgagttatttatctatctactcacaatctagaac---cttgtaagtttcagttgt--agtcaataatacatggtttttgttcacag-------------
|||| | || ||||| || ||  | |||||||||||||| ||||| || |||||||| ||||||||  |  | ||||||||||| |||||||| || |||||| | ||| | ||| |  |       | |  | |   ||| |   | |    | |  || |  |  ||      |  | || |||              
ACATTTAGGACGTACTGGTAGCAGAAGGGATGATCTGGAATCATTAGCATATACATTGATATTTCTTCTTAGAGGAAGGTTGCCGTGGCAAGGTTATCAGgtgtgctatctttctttggatgggatttttgaatcattcttttggttattgactatgcagactttcttattcatgtcatatttacatgcttgaagccatt

upper sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 10
ACATCTTGGTCGTACAGGAAGTCGGAGGGATGATCTGGAGTCATTGGCTTATACATTAATATTTCTGATGCGGGGAAGGTTGCCATGGCAAGGATACCAGgtgagttatttatctatctactcacaatcta---gaaccttgtaagtttcagttgtagtcaataatacatggtttttgtt--cacag
|||| | || || ||||||||| | ||||||||||| |||||| | ||||| |||||||||||||| ||    ||||| || |||||||| || || ||||||||||  |  | | | |       ||| |      |   | ||  ||||  ||   | | |  |   |  |||    |   ||||
ACATTTAGGACGGACAGGAAGTAGAAGGGATGATCTCGAGTCACTAGCTTACACATTAATATTTCTCATTAAAGGAAGATTACCATGGCAGGGCTATCAGgtgagtttatattgtttgtgtctttgatccattcaggctgaggaaacttcatctgattttagttttttctcatttggaatattacag