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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACAATCAAGTTTGTGGATTCTCTAAAGATTCCTTACATTGCACCATCCTTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtctttggcaaaatcgaacaaagttatctttgattccatatgcttccgtctttgacaaaatcgaacaaatttccgatttctaatgggtggttttgatttcag

Basic information

species Arabidopsis thaliana
transcript AT3G01120.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G113873_T03 (Zea mays), 5'ss of exon 11
CGACAATCAAGTTTGTGGATTCTCTAAAGATTCCTTACATTGCACCATCCTTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtctttggcaaaatcgaacaaagttatctttgattccatatgcttccgtctttgacaaaatcgaacaaatttccgatttctaatgggtggttttgatttcag
| ||||  || ||  | |||||| | ||||| || ||   ||| || || ||||| ||||| || |||||  |||| || ||||||||||||||||||||||| |   ||  ||     |   |  |  |  ||  |  | |    | | | | |   |||   | || |   | |  |  || |||   |               
CCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTGgtaagaacttaacatttgtgg-tattgagacattcaaaacaaatgacatacttgtgctacatt-ttgagc---tctgtggcttataaacag---------------

upper sequence: AT3G01120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G113873_T02 (Zea mays), 5'ss of exon 10
CGACAATCAAGTTTGTGGATTCTCTAAAGATTCCTTACATTGCACCATCCTTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtctttggcaaaatcgaacaaagttatctttgattccatatgcttccgtctttgacaaaatcgaacaaatttccgatttctaatgggtggttttgatttcag
| ||||  || ||  | |||||| | ||||| || ||   ||| || || ||||| ||||| || |||||  |||| || ||||||||||||||||||||||| |   ||  ||     |   |  |  |  ||  |  | |    | | | | |   |||   | ||                                      
CCACAAGGAAATTCATCGATTCTGTTAAGATACCCTATCATGCCCCTTCTTTCGGAGGCTGTGAGAGCATAATTGATCAGCCTGCTATCATGTCCTACTGgtaagaacttaacatttgtgg-tattgagacattcaaaacaaatgacatacttgtgctacatt-ttgag-------------------------------------

upper sequence: AT3G01120.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv14s0108g01110.t01 (Vitis vinifera), 5'ss of exon 10
CGACAATCAAGTTTGTGGATTCTCTAAAGATTCCTTACATTGCACCATCCTTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtctttggcaaaatcgaacaaagt--tatctttgattccatatgcttccgtctttgacaaaatcgaacaaatttccgatttctaatgggtggttttgatttcag-------------------------------------------------------
| || ||||||||||| ||| |  | || || ||||| ||||| ||||||||||| ||||| || ||||||||||| || ||||| || ||||| |||||||||  |  |       ||  |   |||   ||   ||| | |   || ||  | | |||     |  ||| ||      || ||  |     ||| ||| |  |                                                          
CCACCATCAAGTTTGTTGATGCATTGAAAATCCCTTATATTGCCCCATCCTTCGGAGGCTGTGAGAGCATTGTTGATCAGCCTGCGATTATGTCTTACTGgtattccccttcattcctctcatgtagtagcataaatgaatacccctgttt--ggcattggtctcactgaataatcacaagacttgcac--attgggtttcaccttgtccttgttacttggttctgattcttttaattgaattgttcgtgctttccaaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125060324|gb|EL129001.1|EL129001
EST:     TCATGTCCTACTG                         GGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
genomic: TCATGTCCTACTGgtatgtcttt ... ttgatttcagGGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
EST: gi|86084095|gb|DR379854.1|DR379854
EST:     TTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTG                         GGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
genomic: TTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtcttt ... ttgatttcagGGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
EST: gi|86080184|gb|DR375941.1|DR375941
EST:     TTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTG                         GGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
genomic: TTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtcttt ... ttgatttcagGGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
EST: gi|124924860|gb|EL002915.1|EL002915
EST:     ACCAACCTGCTATCATGTCCTACTG                         GGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
genomic: ACCAACCTGCTATCATGTCCTACTGgtatgtcttt ... ttgatttcagGGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
EST: gi|86081248|gb|DR377005.1|DR377005
EST:     TTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTG                         GGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
genomic: TTCGGTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtcttt ... ttgatttcagGGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
EST: gi|125319611|gb|EL333696.1|EL333696
EST:     TCGGTTGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTG                         GGATCTGCCGCAAGAGGAG
genomic: TCGG-TGGCTGCGAAAGCATTGTTGACCAACCTGCTATCATGTCCTACTGgtatgtcttt ... ttgatttcagGGATCTGCCGCAAGAGGAG
EST: gi|124791246|gb|EH880925.1|EH880925
EST:     AGCATTGTTGACCAACCTGCTATCTATGTCCTACTG                         GGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT
genomic: AGCATTGTTGACCAACCTGCTATC-ATGTCCTACTGgtatgtcttt ... ttgatttcagGGATCTGCCGCAAGAGGAGAGACTAAAGTATGGAATCAAAGATAACTTGGT