Sequence
atgc intronic sequence ATGC exonic sequenceGATATTCAAGAGGCACACGCTGGACAAATTGTAGCTGTGTTTGGTATTGAGTGTGCATCAGgtacagtaaaatattcttccgtacttgttcgaacttaacataatttgcttctctggggatgaaattctgatattgtgtttgttgttgggtcaattttcctaaatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G45030.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 10
GATATTCAAGAGGCACACGCTGGACAAATTGTAGCTGTGTTTGGTATTGAGTGTGCATCAGgtaca-------gtaaaatattcttccgtac-ttgttcga-acttaacataatttgcttctctggggatgaaattctgatattgtgtt--tgttgttgggtcaatttt-cctaaatcag-----------------------
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GATATTCAAGAAGCACATGCTGGTCAAATTGTTGCTGTCTTTGGTGTTGATTGTGCGTCAGgtaaatttttgagtgaagtgtagggccacaggctattcaagaagtacctctgtccactatactaccatgtgctcttcgattttctgttgacattttcggatttgttctgtgttggtctgattatttgttctcgcatcaatag
upper sequence: AT2G45030.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G056393_T02 (Zea mays), 5'ss of exon 10
GATATTCAAGAGGCACACGCTGGACAAATTGTAGCTGTGTTTGGTATTGAGTGTGCATCAGgtac--agtaaaatattcttccgtacttgttcgaactta--acataatttgcttctctggggatgaaattctgatattgtgtttgttgttgggtcaattttcctaaatcag
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GATATTCAAGAAGCATATGCTGGCCAAATTGTTGCTGTTTTTGGTGTTGATTGTGCATCAGgtacgcagacaaacaaggggacaatcttactttattttatagttctgtttacttcatttattctgga--tctgacttttcacttctctttg--tcaatag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124881757|gb|EH960659.1|EH960659EST: GGCACACGCTGGACAAATTGTAGCTGTGTTTGGTATTGAGTGTGCATCAG GTAATACATTTACGGATGGATCAGTC
genomic: GGCACACGCTGGACAAATTGTAGCTGTGTTTGGTATTGAGTGTGCATCAGgtacagtaaa ... cctaaatcagGTGATACATTTACGGATGGATCAGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATATTCAAGAGGCACACGCTGGACAAATTGTAGCTGTGTTTGGTATTGAGTGTGCATCAGgtacagtaaaatattcttccgtacttgttcgaacttaacataatttgcttctctggggatgaaattctgatattgtgtttgttgttgggtcaattttcctaaatcag
- - - - - - - - - GCTGGA