1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCGGCTCTGTATGACCGCCTCCTCGTCTCTGAAGAACTTCAACCATTCGGTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattacttacttccactataaccacattatagatgtcccatccggtttccatgcggtgtcagaccatacaagctaacttaacccgtgcgtttcgtacctttccag
species | Arabidopsis thaliana |
transcript | AT2G42600.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|163976568|gb|ES177685.1|ES177685
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|125315918|gb|EL330003.1|EL330003
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAEST: gi|124776269|gb|EH866396.1|EH866396
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAA
EST: CCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|116477132|gb|EG519724.1|EG519724
genomic: CCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|125231375|gb|EL245460.1|EL245460
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: TTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTC-AG GTTGCAGGTCACAAAGACATTTTAGAAGGTGAEST: gi|125125539|gb|EL170974.1|EL170974
genomic: -TGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGA
EST: CAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|86087843|gb|DR383602.1|DR383602
genomic: CAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGAEST: gi|124865013|gb|EH949450.1|EH949450
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTT-AGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|124924894|gb|EL002946.1|EL002946
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|86065049|gb|DR360806.1|DR360806
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|86068615|gb|DR364372.1|DR364372
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: TGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCCTCCAG -TTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACEST: gi|125002290|gb|EL074559.1|EL074559
genomic: TGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCC-TCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTAC
EST: CCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGGEST: gi|124950611|gb|EL026060.1|EL026060
genomic: CCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGACCCTTACTTGAGGCAAAGG
EST: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAG GTTGCAGGTCACAAAGACATTTTAGAAGGTGA
genomic: GTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattactta ... acctttccagGTTGCAGGTCACAAAGACATTTTAGAAGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGGCTCTGTATGACCGCCTCCTCGTCTCTGAAGAACTTCAACCATTCGGTGAACAACTTCGAGTTAACTACCAAGAGACCAGACGCCTCCTCCTCCAGgtattacttacttccactataaccacattatagatgtcccatccggtttccatgcggtgtcagaccatacaagctaacttaacccgtgcgtttcgtacctttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC