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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTGAGGTTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGgtaggtctcagatatatgtatatcgccattcgtatataatgaagtagtcgctttagtgttgtcatactctgcttgtttttgctacag

Basic information

species Arabidopsis thaliana
transcript AT2G41490.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41490.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv08s0007g05920.t01 (Vitis vinifera), 5'ss of exon 10
ACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTGAGGTTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGgtag----gtctcagatatatgtatatcgccattcgtatataatgaagtagtcgctttagtgttgtcatactctgcttgtttttgcta-cag--------
|||||| || ||||| ||||||||  | || ||  | |  || ||    |||||    |  ||||||||||| ||||||||||  |||||||||||||||||       ||     | ||||||  |     |||    |||      |  |   ||||   |||   || |   ||| ||    | | | |        
ACTGACTGGAACAAATGATGGGACTGTTGTAAACCTATTTTTAAGACAATTTGGCAGGATGTCAGAAAAGTCACTTTGCATCCTACTTCTCGTTTTCCAGgtgattgaatcatgtttttatgtagttttttcttcaaccataccatcatgttatatttatcattgatgtagtaatcttattgagcccaactgttaataga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083719|gb|DR379478.1|DR379478
EST:     TTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAG                         GCTCTAGCCTGCGCCTTCTGCTTCATACTTCGACACTTTCTTGCTGGTTGG
genomic: TTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGgtaggtctca ... tttgctacagGCTCTAGCCTGCGCCTTCTGCTTCATACTTCGACACTTTCTTGCTGGTTGG
EST: gi|116441309|gb|EG483901.1|EG483901
EST:     TTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAG                         GCTCTAGCCTGCGCCTTCTGCTTCATACTTCGACACTTTCTTGCTGGTTGG
genomic: TTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGgtaggtctca ... tttgctacagGCTCTAGCCTGCGCCTTCTGCTTCATACTTCGACACTTTCTTGCTGGTTGG