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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAGAAACTTATTGTTGAGGCATATACCCCACCTGACCCAGGGCCTTATCCTCAGGACCAGCCGAAGCAGAACTCAGTTAAATTTACACCTACACAGgtactacttatttctacatcctaagtgcagtatgctgatttggtttttatataattgtgctgtgctatacttgtcaacttttcgtcattcttgctatttg...

Basic information

species Arabidopsis thaliana
transcript AT2G38770.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G38770.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 5'ss of exon 10
GAAGGAGAAACTTATTGTTGAGGCATATACCCCACCTGACCCAGGGCCTTATCCTCAGGACCAGCCGAAGCAGAACTCAGTTAAATTTACACCTACACAGgtactacttatttctacatcctaagtgcagtatgctgatttggtttttatataattgtgctgtgctatacttgtcaacttttcgtcattcttgctatttg-----
| |||| || |||||||||||||||||||  || |||||||| || ||||||||||| || ||||| || |||||||| || | |||||| || |||||||| | |   |  ||    |  ||     | |||  |  ||    | || |  |    |  ||| || |   | |||   | |  | ||| ||| | | |      
GCAGGAAAAGCTTATTGTTGAGGCATATATTCCTCCTGACCCTGGTCCTTATCCTCAAGATCAGCCCAAACAGAACTCTGTCAGATTTACGCCCACACAGgtgcaagacaactc----ttttatccataatat-ttacttcatatattttggagggattttgttctgtgtatatcagtgtattattatttttggtgtctttcctt

upper sequence: AT2G38770.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv13s0019g00880.t01 (Vitis vinifera), 5'ss of exon 10
GAAGGAGAAACTTATTGTTGAGGCATATACCCCACCTGACCCAGGGCCTTATCCTCAGGACCAGCCGAAGCAGAACTCAGTTAAATTTACACCTACACAGgtactac-ttatttctacatcctaagtgcagtatgctgatttggtttttatataattgtgctgtgctatacttgtcaacttttcgtcattctt-gctatttg--
|   || || || ||||||||||||||||  || ||||||||||| ||||||||||| || ||||| || |||||||| || | |||||| || |||||||| | |   || |  |  ||||    ||   | ||||   |   |||| |    ||| |  | | |  |   | |     ||| || ||| || | | | |   
GCGAGAAAAGCTAATTGTTGAGGCATATATTCCTCCTGACCCAGGTCCTTATCCTCAAGATCAGCCCAAACAGAACTCTGTCAGATTTACGCCCACACAGgtgcaagactactcttttatcc---atgatatttgcttcatatattttgaagggattttatt-ttccgtgtatatttgtgttttgttattttttggtgtctttc