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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtataccttgacctatatctgagaattgaacagtgttaatacctttatttctattagt...

Basic information

species Arabidopsis thaliana
transcript AT2G37160.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os12g07450.3 (Oryza sativa), 5'ss of exon 10
-----TGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtatt-cagttatactaaacacttttttgctttaacgttgagagtatacctt---gacctatatctgagaattgaacagtgttaatacctttatttctattagt-
     ||| ||  | |||||||||||||||||  | || ||||| || ||  | || || |||  | ||||||| ||||||||||||||||||||||  ||  | ||   | |    |   | | ||   |  ||  | | | ||   ||| | |   | |   || |    ||| | || |    ||||| || |  
GTCAGTGGAGTTTCTTTTGATTCGTATTGGTCTCCTCCGAATTCTGATGGAACAGGAGAAAATACCGTGTATCGTTTTGGTTCTGTTGGTCAGgtatcacaaatttatatagc----tggagatatagtatgcagtctgtgcttttatgacatgtccttaatgtttaactcatgt-agtatcaaagtttctttttgag

upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA19G36480.2 (Glycine max), 5'ss of exon 5
-----TGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtatacctt---gacctatatctgagaattgaacagtgttaatacctttatttctattagt
     ||| || || || ||||| |||||||| || ||||||||| | |    ||| |||| | | |||||||| ||||||||||||||||||||| ||||  | |     || | |  |  ||     ||    || || |||     ||||| |   |    | || |    ||| |    |   ||| |    
GTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAGgtactcagaaaaatgtttcattataatatttactttttctatgtgtagcttttcagcctatgtaaaactcatcaatatacctaacatagatggatctgtg---

upper sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
-----TGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtataccttgacctatatc-tgagaattgaacagtgttaatacctttatttctattagt
     ||| ||||| |||||| | | ||||||  | ||||||||||| ||  | || || ||| |  ||||||| |||||||||||||||||||||| ||   |   |    |   |  ||  ||| | |  | |  ||   | |||  || || | ||   || | |   ||  |   |    | ||  ||  
GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggat-gacaaatttcatcagcgatggatatcttttcttagtgatctccttatatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164029073|gb|ES149999.1|ES149999
EST:     AGAGGGGTTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAG                         GACACACAGTTACTGCTATGGGACC
genomic: AGAGGGG-TCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagtt ... tgccgaacagGACACACAGTTACTGCTATGGGACC