Sequence
atgc intronic sequence ATGC exonic sequenceGTAAGTGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtataccttgacctatatctgagaattgaacagtgttaatacctttatttctattagt...
Basic information
species | Arabidopsis thaliana |
transcript | AT2G37160.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os12g07450.3 (Oryza sativa), 5'ss of exon 10
GTAAGTGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtatt-cagttatactaaacacttttttgctttaacgttgagagtatacctt---gacctatatctgagaattgaacagtgttaatacctttatttctattagt-
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GTCAGTGGAGTTTCTTTTGATTCGTATTGGTCTCCTCCGAATTCTGATGGAACAGGAGAAAATACCGTGTATCGTTTTGGTTCTGTTGGTCAGgtatcacaaatttatatagc----tggagatatagtatgcagtctgtgcttttatgacatgtccttaatgtttaactcatgt-agtatcaaagtttctttttgag
upper sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA19G36480.2 (Glycine max), 5'ss of exon 5
GTAAGTGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtatacctt---gacctatatctgagaattgaacagtgttaatacctttatttctattagt
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GTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAGgtactcagaaaaatgtttcattataatatttactttttctatgtgtagcttttcagcctatgtaaaactcatcaatatacctaacatagatggatctgtg---
upper sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 10
GTAAGTGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtataccttgacctatatc-tgagaattgaacagtgttaatacctttatttctattagt
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GTCAGTGGAGTGGCTTTTGATCCATTTTGGTCACCGCCAAATTCAGATGGCACGGGGGAAAATATTGTGTATCGTTTTGGTTCTGTTGGTCAGgtatgcaaaaaacatctgtatggtcatggattatcatcaatatcatggat-gacaaatttcatcagcgatggatatcttttcttagtgatctccttatatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164029073|gb|ES149999.1|ES149999EST: AGAGGGGTTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAG GACACACAGTTACTGCTATGGGACC
genomic: AGAGGGG-TCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagtt ... tgccgaacagGACACACAGTTACTGCTATGGGACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAAGTGGTGTGGCGTTTGATTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagttatactaaacacttttttgctttaacgttgagagtataccttgacctatatctgagaattgaacagtgttaatacctttatttctattagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaaca