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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAGgtaggtttttgctcactcttctcatgagattgttctaggatcaagaatttttttacaactaatgaaatgattaactgtgatgtaatttatcatttttctcgctgtgcttttttcaattctttgttaatgtttctgctaaatttttgtcttcacattccag

Basic information

species Arabidopsis thaliana
transcript AT2G36360.5
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G36360.4 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os03g61950.1 (Oryza sativa), 5'ss of exon 10
CTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAGgtaggtttttgctcactcttctcatgagattgttctaggatcaagaatttttttacaactaatgaaatgattaactgtgatgtaatttatcatttttctcgctgtgcttttttcaattctttgttaatgtttctgctaaatttttgtcttcacattccag
||  || | ||||| ||||||||||||||||| ||||| ||| | |||||||| ||||| |||||   ||| ||||| ||||| |||| |     ||  | | |        |||| || |    ||| |   || |   ||   | ||  || ||| |    ||  ||   |  ||||||||| | |||                                                       
CTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGGgtaagcaccagcaaattttct------gatttttttt---tcatgttgttgtgagcatgcattgggatcattgatatggaattagcattacatttttcttgatgtcaac---------------------------------------------------

upper sequence: AT2G36360.4 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G351160_T01 (Zea mays), 5'ss of exon 10
CTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAGgtaggtttttgctcactcttctcatgagattgttctaggatcaagaatttttttacaactaatgaaatgattaactgtgatgtaatttat-catttttctcgctgtgcttttttcaattctttgttaatgtttctgctaaatttttgtcttcacattccag
||  || | ||||| ||||||||||||||||| ||||| ||| | |||||||| |||||||||||    || ||||| ||||| |||| |                  ||| || |||          |     |||||   | |  |  |  |||| ||||   ||  || | | | | ||||| | ||||  |    |     | | ||||                                 
CTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGATATGATGTGTACTATAATGAATGCATTATTTTAGACAGGGgtaag------------------atgtgaatgt----------aattccttttttttatttgtatagagatttactgaactgggatatgtgcgtctttcttg-tgtgggtaacactgcattctcttaac--------------------------------

upper sequence: AT2G36360.4 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA20G32900.1 (Glycine max), 5'ss of exon 10
CTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAGgtaggtttttgctcactcttctcatgagattgttctaggatcaagaatttttttacaactaatgaaatgattaactgtgatgtaatttatcatttttctcgctgtgcttttttcaattctttgttaatgtttctgctaaatttttgtcttcacattccag
 |  || | ||||| || ||||| |||||||||||| |||||||||||||| | || |||||||||   || || || |||||||||  |   ||  ||||| | |  ||    |   ||||| |  |    | | || | ||| |     |   ||  || || |   || |||  | |||    |                                                          
TTGTTGATGTTTGGAGGGCATGGGACTGGTGGATGGTTGAGTCGTTATGATATCTATTATAATGATTGCATTATATTAGACAGAGgtgagaactt--tcactatacctatttagtgtatctagcacaattgctatattaagaaccatcattactgttgtctctgttt--atctattctatttaaaacca--------------------------------------------------------

upper sequence: AT2G36360.4 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv13s0074g00620.t01 (Vitis vinifera), 5'ss of exon 11
CTTCTGTTATTTGGGGGACATGGAACTGGTGGATGGCTGAGTCGTTATGATGTTTACTATAATGATACTATAATTTTGGACAGAGgtaggtttttgctcactcttctcatgagattgttctaggatcaagaatttttttacaactaatgaaatgattaactgtgatgtaatttatcatttttctcgctgtgcttttttcaattctttgttaatgtttctgctaaatttttgtcttcacattccag
||  ||||||||||||| ||||| |||||||| ||| |||||||||||||  ||||||| |||||    ||  ||||||| || |||  ||           ||| |||||      |   |   ||||    | |||    |  ||||||   | ||| | |   | |   | |||  || |  |  |     | ||   || |                                        
CTCTTGTTATTTGGGGGGCATGGGACTGGTGGTTGGTTGAGTCGTTATGACATTTACTACAATGAATGCATTGTTTTGGATAGGGgtgagtg----------cttttcatg------tatgaatctcaattgatgttt----atcaatgaagccactaattatccagcaggct-tcaccttgcaggaggactgatattgtgttgtg---------------------------------------