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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTGGAGATTCGAGCAAGTTCTTAGTTCTTCCTTTACATGGTTCAATGCCGACGGTTAATCAACGTGAAATTTTTGACCGTCCACCTCCTAACAAACGgttagccctctgagctatcgattcgtcatttcttcttttatcattctgctttgtagcaacttttctaagcgaatgctctgcttttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G35920.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G399212_T01 (Zea mays), 5'ss of exon 12
TTCTTGGAGATTCGAGCAAGTTCTTAGTTCTTCCTTTACATGGTTCAATGCCGACGGTTAATCAACGTGAAATTTTTGACCGTCCACCTCCTAACAAACGgttagccctctgagctatcgattcgtcatttcttcttttatcattctgctttg-tagcaacttttctaagcgaatgctctgcttttgtag----------
| |||||   | | |  |  ||  | ||||||||||| |||||||| ||||| || || |||||||| |||||||||||| | |||||  |||| |   ||| ||||   |  |    |  |  |  | |  || | |||   | |||      |      |    |  |  ||| | ||       |            
TCCTTGGCAGTCCTAATAGATTTCTTGTTCTTCCTTTGCATGGTTCTATGCCAACTGTGAATCAACGCGAAATTTTTGACAGACCACCAGCTAATATGAGgtgagccagttaggtacccattgagaaaatagttgtgttaggttcctgggacaatgagggatgagatgggtcaatccactttcagcatgtgtttggttga

upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 11
TTCTTGGAGATTCGAGCAAGTTCTTAGTTCTTCCTTTACATGGTTCAATGCCGACGGTTAATCAACGTGAAATTTTTGACCGTCCACCTCCTAACAAACGgttagc-cctctgagctatcgatt-cgtcattt----cttcttttatcattctgctttgtagcaact------tttctaagcgaatgctctgc---ttttgtag-
    |||||| || |||||||| ||| | |||||||||||||| |||||||| || || || ||| ||||||| ||||||||||| || ||||||||  ||  ||    | |    |  | ||| | |||||      || ||||   | | || |||| || |  |      ||| | ||   |   |   |    | | ||  
----TGGAGACTCTAGCAAGTTTTTAATCCTTCCTTTACATGGCTCAATGCCTACTGTCAACCAATGTGAAATATTTGACCGTCCTCCCCCTAACAAGAGGCAAgtgtgtttcttttgccaatttcatcattgatggtttgttttggaaatatg-tttggagaagtttatgtctttatgagtagaaagttgacaagctctatata

upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 13
TTCTTGGAGATTCGAGCAAGTTCTTAGTTCTTCCTTTACATGGTTCAATGCCGACGGTTAATCAACGTGAAATTTTTGACCGTCCACCTCCTAACAAACGgttagc-cctctgagctatcgatt-cgtcatt--tcttcttttatcattctgctttgtagcaacttttctaagcgaatgct--ctgcttttgtag-----
|  |||||||  | |||||||||||| | |||||||||||||| |||||||| || || || ||| ||||||| ||||| ||||| || ||||||||  ||  |||   | |    |  | ||| | |||||  |  | | || |   | |   ||     || |||   |   ||| | |  |    | | ||      
TAGTTGGAGACCCTAGCAAGTTCTTAATCCTTCCTTTACATGGCTCAATGCCTACTGTCAACCAATGTGAAATATTTGAACGTCCTCCCCCTAACAAGAGgcaagcatatttcttttgccaatttcatcattgatggtttgttttggatatatgtttggagaagtttatgagtagaaagttgacaagctctatatataaa