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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAGACATTCGAATACTTTGTAAGGAAGCTGCGATGCAACCACTGAGACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctcttttaaaaagaatccgtcattggcatagtttaccttttaaaactgcagaatctttgacattattagttttgtcttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G34560.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164129035|gb|EL987972.1|EL987972
EST:     ACGCACATTGGC-ATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCG
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCG
EST: gi|164086731|gb|ES163954.1|ES163954
EST:     TTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCT
genomic: TTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCT
EST: gi|125196416|gb|EL211370.1|EL211370
EST:     TTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCT
genomic: TTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCT
EST: gi|164074298|gb|ES153208.1|ES153208
EST:     ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCC
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCC
EST: gi|47831791|gb|CK121475.1|CK121475
EST:     ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
EST: gi|164188794|gb|ES028361.1|ES028361
EST:     ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATT
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATT
EST: gi|125061131|gb|EL129770.1|EL129770
EST:     ATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
genomic: ATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
EST: gi|125149159|gb|EL182463.1|EL182463
EST:     ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCCAG
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAG
EST: gi|86084400|gb|DR380159.1|DR380159
EST:     ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG                         AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTCAGACATTCGAATACTTTGTAAGGAAGCTGCGATGCAACCACTGAGACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctcttttaaaaagaatccgtcattggcatagtttaccttttaaaactgcagaatctttgacattattagttttgtcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA